Chr:
Chr7
Start:
11781559
End:
11783928
Strand:
-
Ref_name:
OSA-LNCN6447
Sequence
(OSA-LNCN6447.1):
AAUGUUGUUACUGCGGAAAGCAGUCGUGUUACUACACAUUGGUCGUCUCGUUACUACGCCGUUCCAGUGAGACGAGGACUAAAAAGAGGUAAAUCUCAAUCUUUAUAGAGCAAUAUCUCUCACAUAAUAUCUUGUUUUUCUAAUCCGUUUGCACCAUGACGUUCAAAAAAAAACACUUAACAAAACUAGAUCCAUCAUGACUACUUUUUGAUGUUGUUACUGCGAGAAAGUUAUCUUGUUACUACACGAUGACCGUCCUGUUACUGCAUGAUUCCUGCAAGACGAGAACAGCAAAGUGGUUGGUGGGUUUGACCCUUGGGAGAUGGGGGGUGUAGAAUAGUUAUUCUAGGGGAGGGGUGUAUAUAUACGUAUAUAUGUAUAUAUAUGUAUAUGUACAUAUAUGUAUGUACAUAUGUAUGUGUACAUAUAUAUAUACAUAUAUAUAUACACACACACACCUGCUCUCAUCCACCGUUGAUCCAAACCUGCGUGAUUGAGUUUCCCUGUCCCUGCUAAUGGGUGCAUCAAUACGAACCCGUUCCAUUUUUGUGAAAAUAAAUAAUUCCCAUAAUUGUUAAUUAUUCCAAAUAAACAGAACUGACGUCCUUACCGAAUGGAUCGUAUAAAUCCAUCGUUCUCAAUCUCAAAAGAAAAACCCUCGUCUCCAGUCGGCAGCGCCGACGACUCAAUCUCGUCGGCGGCGUUCCCAUCGCAGGCGCAGGUGGGCGAUGUCUCGCCUUGCUCUCCCAUGUCAUUCCCAGGCGGGAGGUGUCACACAUCGAUCUCCCUCGACAUUACCAGUUGAUCAGAGCACACACAUAUAACCCAUCUACAGCUCUACAAGCCGUUCAACAGAGAUUCCUAGGUGAUCUAUGGUAUGGAUCCAUAGGCUCUGUUUCCAGGCAUGUAAUCCUUCCUACUUUCUCUGCUUGUAUUGCAGAUCAACAGUUCCCUUUCGUUUAAUGUAGAUCUCAUGCAGCUGACUUUUAUUUUUCGAUGUGUAGAUCAUGAACGUCGAUCUAGAAUGACGACUGCAUAUUCCCAAGCGGCGCGCCAGCUCAUCCAAUCGCAGCGGUUCAUCUACCUCGUUGCCGACGGGAUGACGACAGCCUUGCUAGCUAGUUCCAACAGCAGGGCACCUGACGACUUCUUCAUAUUAGUUUCGCCGCUGACCCAAUGACUCCAGAUCGAGGGAUGCAGUCAUGCAGCAAGCAAUUAAGACUAAUGAGGCAGCCCGACGCUGCACGGAACGGUGGGGAUUUUAUUUUAUUUUAUUUUGAUUGUGAUGCAUUCUUUUCAUGGCAAUCCAAAUUUGUUCUUCCGUUCGUUCAAUAAUUAAGUCUAAUUGAUGCGUGCAGAUGGUUGCCAGCCGGCGCCAAGAACGCGUGUUGACUCCAAUGACUCAAUUGCUUACCUCAACCCUGCAACAGCUAGCGCAGAGAGUAUGUGUUGCGCCAUGGGAAAAUGCCCUUGUUUAGAAAGUGUGAUUUGCUAGCUGAAUUUUGUUUUAAAGCAUUCUGAGAAUCGAGUAUAUAUUGCUCAGAAAAGAAAACAGAGCUUUGUGCUUCUCGUAUUGAAUAUUCUGCUUUUUUAGAUGCUGUAUGCAUGAAGUGAAUGAGAUAUACUGGCUGGAUUGUUUGUUCUUGUUUGUAUUCAGCGUAUGGUUUAGUUUAUAUAUAGAGUAGAACGGCUCUCUUCUUCAUAUUCUCAUCUCAAUACAUACUGCCUUUUGCAUCUUACAGAAUUUAUCGAUACUUUUGAUCUUCAGAUAACAGUAAAAAGAAAAACUUACCGCUACUAACUUAAAAAUAGCAUAUACUAAAAAAAUUCAUAUCCUGCUAUACUAAGUAAGAAGCAAUAUAUACUGCUGGAGUACUACCUUAAGAAAAGUAUAUACUGCUAGUAACUAAAAAAAAUGUACUUCUAUAAACUGCUACUGACUUGAAAAGGUAUAUACCACUACUAACUUAAAAACAGUAUAUACCACUUCUAGCUAAAAAACAGUACAUACCACUACUAGCUUCUAGUAUAUACUAACUGAGCAAAAAAAGAAGCAUAUACUGCUUGAUUAAGGGAUGUAGUAUAUACUGACCGAAAAAAGGUAGUACAUCUUUGUCGAGGAAUGUAGCAUAUAUUGAUAAUACAACGUAUAAAAACAAGUAUAUACUACUGCUAAUUAGUAUAUACUACCAGUGAUGCUAACUACACCAUUCUAAGUAAAGAAGCCAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
7.11%
ME_num:
MEP:
87.2%
HE_num:
HEP:
5.49%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.55
Avg Expression:
3.99
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.33444179347693 | 7.23731135144683e-07 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.14168547284073 | 0.00387078289855041 |
3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.1064170585013 | 0.0158811565774415 |
4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.06340408998576 | 0.000650173791606507 |