RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN6442

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

11750692

End:

11760595

Strand:

+

Ref_name:

OSA-LNCN6442

Sequence
(OSA-LNCN6442.1):

GUCGGACUCGCCUUCCUCCUCCAGCCGGCCGCUCCUCCCGUGCCGUGUGAAGCCGACGCCGCAUCCUCCGCUCGAUCCGGUGCAUCCUGUGCUCCGUUUCCGAAAUUGGUUGCAAAAACGGAUUCCCCUCGAUCUCCUCUACCUUAUCCCCAAGAAACCCCCUUGAAUCCCGUGGUAUAUCACGUGGAUUCGACGCGGUUUUGAGUUCCUAUUUUCCGGCGAACCCUAACUAAUCCGUCGCCGAUUUCAUCCGUUCCCGAGCCGAUCUCUCCCUUUUCCGGCUAUUAAUAGCAGUCCCGAGACCUCCUCUUCUGUUUCCCUCUUUUUCCCGAGUUUUUCCCUAGCCCUAGCCGCCUCCCCACGUUCGGCUUCUCUCUCCGCCACCGGCCAUCGCUCCAGCCGCCCCUCGCCGGCGCCUCGGUCGACGCCGCCCUAUGUUGCCGCUACCCUCGGCUCCGCAAAGCCGAGCUCCACCUCGGCCACCCGUUCCUUUGCGCCAAACCCCGCCGGAAUUCACCGUCACCGUGAAGGCCGAGCCGUCGCCAUGUUUUGAUCUCUGGCAAAGCUUUGCCGCUUCUCCCGUGGUCGCCGAACCUCGCCGUUUCUUCUGGUGGCAUCGCAGCACCAAGUUGAAGCCCGUCCACCCCUCUGUUGCCGCCGCUCGUCGCCAGAAAGCCAUCGCCAUCGUCACCCCAAGGUCGCCGACCAUCUCCCUCGCCGUCUGUCAUCGCGUAAGUGGUGGUUUAGUUUUCCGUUGUUUCGGAGGAUCGUUCGUUCGUUGGAGAAGUUCCUGAAGAUGAAUUGAAGAUGCUUGUUUGUAAGUUGAAGAAAAAGGAUCCAGAAGGAGAAGACCUUUGGCUUAGAUCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCUUCGCUAGAUUUUAUUUUCCGCUGCAGUUUUCUUCAUGGUUUAGUUUUCCGUUGUUUCGGAGGAUCGUUCGUUCGUUGCAAAAGCUCCUGAAGAUGAAUUGAAGAUGCUUGUUUGUAAGUUGAAGAAAAAGGAUCCAGAAGGAGAAGACCUUUGGCUUAGAUCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCUUCGCUAGAUUUUAUUUUCCGCUGCAGUUUUCUUCAUGGUGAGGACUAAGUGCCUCUUAUGUAAGUAUUUAUUGUUUUAGUUAUUUUGAUGAAUCUGUAUAUUAAAUUGUCAGUUUGUGUACCUCGGCUGAUUCCUGGACGAGGGUUUUAAUGCACAAAUUAGUUCAGAAAUUACUUGUGAAUUUCUGGGCGUGACAAAGUAGGAGUACAACUCCUAAUCACACUAGACUCUAUCCAAAUUACAAUCUCCUAAAGCCUGCAGCCUCACAACCGGCUACCGUCAAUCCGUGUCCUAGCCAACCUGACAUGGACAAAUGUCUGUCUCAUACGAAGUCCCAG

Sequence
(OSA-LNCN6442.2):

CGCCGGCGCCUCGGUCGACGCCGCCCUAUGUUGCCGCUACCCUCGGCUCCGCAAAGCCGAGCUCCACCUCGGCCACCCGUUCCUUUGCGCCAAACCCCGCCGGAAUUCACCGUCACCGUGAAGGCCGAGCCGUCGCCAUGUUUUGAUCUCUGGCAAAGCUUUGCCGCUUCUCCCGUGGUCGCCGAACCUCGCCGUUUCUUCUGGUGGCAUCGCAGCACCAAGUUGAAGCCCGUCCACCCCUCUGUUGCCGCCGCUCGUCGCCAGAAAGCCAUCGCCAUCGUCACCCCAAGGUCGCCGACCAUCUCCCUCGCCGUCUGUCAUCGCGUAAGUGGUGGUUUAGUUUUCCGUUGUUUCGGAGGAUCGUUCGUUCGUUGGAGAAGUUCCUGAAGAUGAAUUGAAGAUGCUUGUUUGUAAGGAGUCGCAUUCGAAGCUUUGUGUUGUCUCGGUCGUCAUUUCAAGGAUCGUCUGGAGAAUUUUACAUAUCACUACCAUCCGAAACAUG

Sequence
(OSA-LNCN6442.3):

CGGUCGACGCCGCCCUAUGUUGCCGCUACCCUCGGCUCCGCAAAGCCGAGCUCCACCUCGGCCACCCGUUCCUUUGCGCCAAACCCCGCCGGAAUUCACCGUCACCGUGAAGGCCGAGCCGUCGCCAUGUUUUGAUCUCUGGCAAAGCUUUGCCGCUUCUCCCGUGGUCGCCGAACCUCGCCGUUUCUUCUGGUGGCAUCGCAGCACCAAGUUGAAGCCCGUCCACCCCUCUGUUGCCGCCGCUCGUCGCCAGAAAGCCAUCGCCAUCGUCACCCCAAGGUCGCCGACCAUCUCCCUCGCCGUCUGUCAUCGCGUAAGUGGUGGUUUAGUUUUCCGUUGUUUCGGAGGAUCGUUCGUUCGUUGCAAAAGCUCCUGAAGAUGAAUUGAAGAUGCUUGUUUGUAAGGCAAGUCACACAGAUCCCAAACAACC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

389

LEP:

79.07%

ME_num:

96

MEP:

19.51%

HE_num:

6

HEP:

1.22%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.95

Avg Expression:

4.52

Tip: OSA-LNCN6442 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-3.563505719140376.22847427751518e-08