Chr:
Chr7
Start:
11553988
End:
11554977
Strand:
+
Ref_name:
OSA-LNCN6439
Sequence
(OSA-LNCN6439.1):
CUCACUCGUGCGCACUCGGGAAGAAUUUCCCGAUCGGUCACCCAUCCCUAAAUUGCUCUUAACCUCAGAGUUCUUUAGAGAUCGGCUUCCAGAAAAGAAGUUGCAACUUGUUGGUAUGAGUAUUCUAUUAAUCCUAUUAAGCCUUGGGCCGGGAUGUCACAACCUCUGUCCUUAAUCUCCGUAAAUAACUCCAUAAGUAACUAUAUUUUGGGACGGAGGAAGUAUUAAGUAGUGACCUCUAAUUUUGAUUGAUGUAUGAUCUGCCCAGUACAAAAAAACAAAAAGAUCUUUCUAAAUCUAUCUCAUACUAAUCAGACAUUCAGACCUCGCGCAGUCGACCUUCCUCAUCCUGCUUGCCACUCUCCUCCCAAUCUAUCUAGUAUUCUAGUAGAGUGCUAGUGCACCUUUCCUAUCUUUUCUCCCACUCCACCCCAUCUCCAAUCUCCAUGUUGCCAUGGCCUGGUCACACUCCAAAAAUGUUCCCUCAUGUGGUCAUGCCCACAUCCUCAUGAAAUGUAACAAAGGGCCUGGCAUGCAGCAGUAAGACUAGACUUUUCCGAGUGAGUGGUGAUUCUACUCAUGCUUGGUGUCAAUCUUGUUUGUCAUUGGAAGAGAAUGACCAUUACACCCCCAAUCAAAAAGUGAUAUAGCAACCAUGAACUUCUGUCGGAGUGAUACUUUUCUUCAAAAGAUAAUAGUGAG
Sequence
(OSA-LNCN6439.2):
CUUUCCUAUCUUUUCUCCCACUCCACCCCAUCUCCAAUCUCCAUGUUGCCAUGGCCUGGUCACACUCCAAAAAUGUUCCCUCAUGUGGUCAUGCCCACAUCCUCAUGAAAUGUAACAAAGGGCCUGGCAUGCAGCAGUAAGACUAGACUUUUCCGAGUGAGUGGUGAUUCUACUCAUGCUUGGUGUCAAUCUUGUUUGUCAUUGGAAGAGAAUGACCAUUACACCCCCAAUCAAAAAGUGAUAUAGUUUGGUGCAUGAUCUAGAACCUUCCCAAAAGUAAAUACCUAAGAAAUAUUGUUUGCUGCAGUUCUUUUUUGGGCAAGCAUCAACACAAUAGGAGGAAGGACAUCAAGGACACAUCAUGUUGAGGUCAAGCAAGAAUUAGCCAGGAUGUUAAAUUAUCUUAGUUGGCACUUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.67%
ME_num:
MEP:
73.17%
HE_num:
HEP:
21.95%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.72
Avg Expression:
9.36
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.46759444204695 | 4.32365692926616e-14 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.6326414264682 | 6.93588793632229e-16 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.59982875004996 | 1.93232162408403e-16 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.70334817842915 | 0.000119761156926238 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.03093025021264 | 3.51596786015104e-12 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.96931619136872 | 5.91695423408363e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.28781580252738 | 0.000129491391750113 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.4497763417908 | 2.32389746521659e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.77042574676094 | 2.31125359383538e-13 |
| 10 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.12197341105455 | 2.55710521084127e-08 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.79222859424018 | 2.13089076956359e-05 |
| 12 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -1.49911318108362 | 0.0174754835860362 |
| 13 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.271180548054 | 0.031455833266215 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.94999605754185 | 2.34850040936754e-14 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.03903061319173 | 4.17575978278557e-16 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.27408061072138 | 1.19605746538713e-13 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.37400011417261 | 1.87124262521381e-18 |