Chr:
Chr7
Start:
11090484
End:
11091720
Strand:
+
Ref_name:
OSA-LNCN6427
Sequence
(OSA-LNCN6427.1):
AGCGAAGUUGCCCCCAACGGCGACAUAAUAGGCCAGCCGUGUAGGCAGAGACUCCAGUCGGUGGCGGCAAAGGCAAGCCGGCGAUGAAGUCGUAGAUGCCCAACAGCGGCGGCAUAAUAGGCCAGCCGUGCAGGCGAAAACACCAGUCGGCGACGCCGAAGGCCAGCCGGUCGGUGAAGAUGUGGACGCCCAUGAACGGUGGUGUGACCAACCAACCGUAUAGGCAAAAACACUAGUCGGCGGCGACGGAGGCAAGCCGGCGGUGAAGUCGUAGACGCCCAACAACGGCGGCAUAAUAGACCAGUCGUGCAAGCGAAAACACCAGUCGGAGGCGGCGAAGGCCAGCCGGUCGGUGAAGACGUGGACGCCCAUGAACGGUGGUGUGACCAACCAACCGUAUAGGCGAAGGCACCAGUCGGCGGCGACGGAGGCAGGCCGGCGGUGAAGACGAUAUCGCCAUCAGCAACGGCAGCGGCGCACACCAACCGUGGAGGUGAUGAAACCAAUCGGCAGCGACGAAGGCGGCCGGCGGUACAUGUAUAAAAUAAUAGAUCAAAUAAUAAUUAGUGAUCUGUGAAUUAAAUCUAAUUUAUAUAAGAAAAUUUAGAACGAUAAACCUGGUUUGUGAUCCAAUUUUGAUUCAAGGCCUGUCAAUGGAUGAACCGUAGCAUGCAGCCGUGUCAUGCAGCCGUGUAGACAUGUAAUCGUCGGUAGCACAUGCAUGGAUUAGUUUGGAGACCACUUUGUGCAUGUAAUAGCUGAUUUGUCUAUGGAUUAAUUUCCUUGACCACAGAUUUGACCAGGUAUAUUUAAUUUGUAUCCUGGACUUUGUGUCUUGCCGUACGUAUCCGAGUAGUAUUGACUUGGUGAUGUACAGGCUCAACCGACGGUGAUCUUCGCAUGAUUUCGGCGGCGGCUGCUUGCUGAUUGCUUCAAAUCAUGCCCUGGUGACGAAACCGACGGACCAACAGACAUGGCAGCAUUGUAGCGACGGAUUUGAUCUCACUGACAGAGAUCCAGAUAGAAUUUUUGGCGACGAAGACCCUGCCCUUUUGUUGAGAAGAUCACGGCCAAAGACAAGAGUAGCACCGAUGACGCCGGCACAAAGUUCCAUCGCACUUCUCGACGGAAAACUCGACGCAACCCCUACCUGGCGCGCCAACUGUCGAAACAUGAAUUCGGCAAUAAUAAAACGGGGUAGCGCACGAGACCUAAAAGUGGAUGGAUGUGGAGACAAAAGAUUUAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
66.87%
ME_num:
MEP:
6.91%
HE_num:
HEP:
26.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.91
Avg Expression:
117.38
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -4.54625329060735 | 0.0157891846947957 |
| 2 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -2.9327493850515 | 0.0280498783973354 |
| 3 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -6.47276655190158 | 8.74531961602577e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.44028354268687 | 0.00490402731839942 |