Chr:
Chr7
Start:
10639463
End:
10640145
Strand:
-
Ref_name:
OSA-LNCN6414
Sequence
(OSA-LNCN6414.1):
GGAGGGGUAUAUGUAAGGAAGAACAUGGUGCACGAUGGUGGGUGUUACUCCCUCCGUCCCUUAAAAAAAACCUAGCUAGUAUGGGAUAUGGCACAUACUAGUAUUACGAAUCUAGACAUGUGUCUAUCUAGAUUCAUAAUAUUAUAGUGGGUUACGAAUAAUAUAAUGGGAUGGUAUUAGUCGGGGAAGUAUCGGGUGCAAUCACCUAAUUCGGUGGUUGCACCGGAUACUUCCCCGGUAUUAGUCAGUCAUGCCGGUUGAGAUGCAUAUACGUAGCAGCAUCACAACCACCCCCUUUGUUGUGUGAACUGGAUCCUCCAAAGGAAUUGUGAAUAUUAAGUUGUACUUAAGUACAUACGGAGUCUGAAUUAUAGAUUUUGAAAUUUAACAAUUUAUAAAUUCAAAAGUUAAUAAAUACCAUGUUGUACGGUUUGUGGAAAUGUAAUCUCCAUGAUUAUGUUGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
65.65%
ME_num:
MEP:
29.27%
HE_num:
HEP:
4.88%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.87
Avg Expression:
3.20
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.406659463588 | 0.034592048885373 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.48354324928054 | 0.02045553017173 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.59707976579361 | 0.00179602566531489 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.97273592681117 | 0.0021006156673412 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.79776398996301 | 1.59486391642949e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.3529636387438 | 0.02532368879947 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -5.12755898694868 | 8.18310133270624e-13 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.9052968961382 | 1.55671551175122e-05 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.31570058791044 | 7.2519097864702e-11 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.10398951114638 | 7.42869694778211e-07 |