Chr:
Chr7
Start:
10267560
End:
10269381
Strand:
-
Ref_name:
OSA-LNCN6407
Sequence
(OSA-LNCN6407.1):
GGCCUGGGUUGGCUUGGGACGAGCUGGGACCCAGGGUCGGGUUGCCAGUUCGGUCUGAAUCAUCGUAGGCCUUGGGUUAAGGCAGGUUCGUGCGGGUUCACGACCUUGAUUAAUAAUACUGUGUAGCUCUAGGAUCGUCUUUUUAAAAUGGCUUUGGGCAACUAAGUGACUUUUAAAUGCUGUUUUCUGCAAAACUUAACCCCUAUAUCAUUACCCCUUGUACCCCCUUGCAUUAAUCGUGCAUCCGCCGAUGUGGCUUGCUGAGUACUGUGGUUGUACUCAUUCUUGCUCUAUCUUUCUCCCCCCUUCAGUAAGAGAAGCUUUGGAGAAGAUGUCUUAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.31%
ME_num:
MEP:
5.28%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.95
Avg Expression:
2.19
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.27179733119353 | 0.0480426301650593 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.43524095810935 | 0.0418095653442013 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.53292631889987 | 0.0351280817261901 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.24339885411472 | 0.0460813010737778 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.71951945667696 | 0.0283691914538453 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.84097598525914 | 0.019544446893126 |