OSA-LNCN6403


Function Link


Basic Info

Chr:

Chr7

Start:

10115180

End:

10116790

Strand:

+

Ref_name:

OSA-LNCN6403

Sequence
(OSA-LNCN6403.1):

GCCCACGAUACGGGUAGUUAUCUCAAAUCGGCUCCGCUAGCCGGUUUAGUUAUGAAAACCCAUCUUGGUUUGGCCGUUUGGCUAGAUUGAGGUCGUUGGUGACUCUAGGAUCACCGCAAAGCUUAAGGUGCUGCGAUCGUGCUUGUCAACUUGUUACAAAAAGUUGCCAACAGAACUGACACCUGUAAUACAAAUAUAGGUAUCGGUUCUAUUAAAAAAAUUGACACCUAUAGUAUAGGUGUCGGUUUUUCAACGGAACUGACACCUUUGAAAAAAACCAAGCCGGCUUUUUUGACCACCCACAGCGCCAUCCACACGACAUCCUUUAUCUUAUCCAUCCAUCCCACACUGCCACACAACGCCAUCUCUCUCUCUCUCUCGCCCCUCCUCUCCUCCAGGGAGGCUCUACGGUGCGGCGGUGUAGCCUCGCUAGUCGCCCCUCUCGCCUUCCUCUCCUCGCGGCGGCGCAGGUGAGGUGGAGUCCGGCGCCGAGGCUGGUGCGGCAAGGUGGCGGCGACAACGGCGGUGGUGGAGUAGGCUGGCCAGCGCGGUUGCUGACGACUGGAGGAGCCUCGCCCCUCUCGCCUUCCUCUCCUCGUGGCGGCGUGGGUGAGGUGGAGGCCGGCGCCGAGGAUGGCGCGGCGAGGUAGCGGCGACAACGGUGGUGGCAAAGGCUGGCCGGCACGGCGGCUGAUGGUUAGAGGAGCCUCGCCCCUCUCGCCUUCCUCUCCUCGUGGCAGCGCGGGUGAGGUGGAGGCCGGCGCCGAGGCAGGCGUGGCGAGGUGGCAGUGACAGCGGCCACCUUUCUCCCGAGGGACCUCGCCCCGCUUCCCUUCUCCUCCUCUAGCACGACGUGGUGUGGCGACCGACACGGCGAGGUUGCGGCGCGGUUGCUGGAUCUCACCGACACCCUCUCUCCCCGGGCCCCCCCUCCUCCAGCGCGGUGUUGGGUGGCGGCCGCUGGCAUGGAGGCAGGCAUGGCUAGGUGGUGGCGUGGAGGCCGGCCAGGCGAGGUGGUGGUGGCGGCGGUGGAGAAGGCCGGUGGCACUGUAGGCGCCAUCAAUUUUUUAUUUUUUUAAUAGUAUAGGUACCGGUUUUAGAACCGGCAGCAAUAAAAAUGAGGCAAAGGUGCCGACCAAUGGAGCCAGUUCCUAACCGGCACCUAUAGGGUUUUCUGUACUAGUGAUCCCUCAACUAUAAAUACCGGAUCAAUUUACCUCCUCGAACGGUUUGAAUGGCGAUUUUCGUCCUACGUGGCAUGUUGAUCGGGUCAUUAUCUGAUGUGGCAACAGCGUGGCGUCGGAAAUAGGGUGGGACCUACCAGCAAGUCUCCAUCAUCUCUCUAUCUCUCCCAUUUUAUUCCUUCCCUUUCUCUAAGCCCGCAUGUCGUUUUCGUUCUAGAGGAGCGCCGACAUUCAUCCCUCGCACGCCUGCUAUGACGGACGAGUGUGGUCGUGGUGUAUGCUGUCAUGACUUGUCAGUCACGGCGAGCACGCGAGGAACAAGCGGUGUCGCUCCUCCGAGCGGAAGUGGCGUGCAUGCAUCCUGCACCUCCCAACCUCCCCGACACCACCUCCACAUUUGUCGGCCACGGUGGGCGAGCAAGGGACG

Sequence
(OSA-LNCN6403.2):

GCCGGUUUAGUUAUGAAAACCCAUCUUGGUUUGGCCGUUUGGCUAGAUUGAGGUCGUUGGUGACUCUAGGAUCACCGCAAAGCUUAAGGUGCUGCGAUCGUGCUUGUCAACUUGUUACAAAAAGUUGCCAACAGAACUGACACCUGUAAUACAAAUAUAGGUAUCGGUUCUAUUAAAAAAAUUGACACCUAUAGUAUAGGUGUCGGUUUUUCAACGGAACUGACACCUUUGAAAAAAACCAAGCCGGCUUUUUUGACCACCCACAGCGCCAUCCACACGACAUCCUUUAUCUUAUCCAUCCAUCCCACACUGCCACACAACGCCAUCUCUCUCUCUCUCUCGCCCCUCCUCUCCUCCAGGGAGGCUCUACGGUGCGGCGGUGUAGCCUCGCUAGUCGCCCCUCUCGCCUUCCUCUCCUCGCGGCGGCGCAGGUGAGGUGGAGUCCGGCGCCGAGGCUGGUGCGGCAAGGUGGCGGCGACAACGGCGGUGGUGGAGUAGGCUGGCCAGCGCGGUUGCUGACGACUGGAGGAGCCUCGCCCCUCUCGCCUUCCUCUCCUCGUGGCGGCGUGGGUGAGGUGGAGGCCGGCGCCGAGGCAGGCGUGGCGAGGUGGCAGUGACAGCGGCCACCUUUCUCCCGAGGGACCUCGCCCCGCUUCCCUUCUCCUCCUCUAGCACGACGUGGUGUGGCGACCGACACGGCGAGGUUGCGGCGCGGUUGCUGGAUCUCACCGACACCCUCUCUCCCCGGGCCCCCCCUCCUCCAGCGCGGUGUUGGGUGGCGGCCGCUGGCAUGGAGGCAGGCAUGGCUAGGUGGUGGCGUGGAGGCCGGCCAGGCGAGGUGGUGGUGGCGGCGGUGGAGAAGGCCGGUGGCACUGUAGGCGCCAUCAAUUUUUUAUUUUUUUAAUAGUAUAGGUACCGGUUUUAGAACCGGCAGCAAUAAAAAUGAGGCAAAGGUGCCGACCAAUGGAGCCAGUUCCUAACCGGCACCUAUAGGGUUUUCUGUACUAGUGAUCCCUCAACUAUAAAUACCGGAUCAAUUUACCUCCUCGAACGGUUUGAAUGGCGAUUUUCGUCCUACGUGGCAUGUUGAUCGGGUCAUUAUCUGAUGUGGCAACAGCGUGGCGUCGGAAAUAGG

Sequence
(OSA-LNCN6403.3):

UGCUUGUCAACUUGUUACAAAAAGUUGCCAACAGAACUGACACCUGUAAUACAAAUAUAGGUAUCGGUUCUAUUAAAAAAAUUGACACCUAUAGUAUAGGUGUCGGUUUUUCAACGGAACUGACACCUUUGAAAAAAACCAAGCCGGCUUUUUUGACCACCCACAGCGCCAUCCACACGACAUCCUUUAUCUUAUCCAUCCAUCCCACACUGCCACACAACGCCAUCUCUCUCUCUCUCUCGCCCCUCCUCUCCUCCAGGGAGGCUCUACGGUGCGGCGGUGUAGCCUCGCUAGUCGCCCCUCUCGCCUUCCUCUCCUCGCGGCGGCGCAGGUGAGGUGGAGGCCGGCGCCGAGGCAGGCGUGGCGAGGUGGCAGUGACAGCGGCCACCUUUCUCCCGAGGGACCUCGCCCCGCUUCCCUUCUCCUCCUCUAGCACGACGUGGUGUGGCGACCGACACGGCGAGGUUGCGGCGCGGUUGCUGGAUCUCACCGACACCCUCUCUCCCCGGGCCCCCCCUCCUCCAGCGCGGUGUUGGGUGGCGGCCGCUGGCAUGGAGGCAGGCAUGGCUAGGUGGUGGCGUGGAGGCCGGCCAGGCGAGGUGGUGGUGGCGGCGGUGGAGAAGGCCGGUGGCACUGUAGGCGCCAUCAAUUUUUUAUUUUUUUAAUAGUAUAGGUACCGGUUUUAGAACCGGCAGCAAUAAAAAUGAGGCAAAGGUGCCGACCAAUGGAGCCAGUUCCUAACCGGCACCUAUAGGGUUUUCUGUACUAGUGAUCCCUCAACUAUAAAUACCGGAUCAAUUUACCUCCUCGAACGGUUUGAAUGGCGAUUUUCGUCCUACGUGGCAUGUUGAUCGGGUCAUUAUCUGAUGUGGCAACAGCGUGGCGUCGGAAAUAGG

Sequence
(OSA-LNCN6403.4):

CUGUAAUACAAAUAUAGGUAUCGGUUCUAUUAAAAAAAUUGACACCUAUAGUAUAGGUGUCGGUUUUUCAACGGAACUGACACCUUUGAAAAAAACCAAGCCGGCUUUUUUGACCACCCACAGCGCCAUCCACACGACAUCCUUUAUCUUAUCCAUCCAUCCCACACUGCCACACAACGCCAUCUCUCUCUCUCUCUCGCCCCUCCUCUCCUCCAGGGAGGCUCUACGGUGCGGCGGUGUAGCCUCGCUAGUCGCCCCUCUCGCCUUCCUCUCCUCGCGGCGGCGCAGGUGAGGUGGAGUCCGGCGCCGAGGCUGGUGCGGCAAGGUGGCGGCGACAACGGCGGUGGUGGAGUAGGCUGGCCAGCGCGGUUGCUGACGACUGGAGGAGCCUCGCCCCUCUCGCCUUCCUCUCCUCGUGGCGGCGUGGGUGAGGUGGAGGCCGGCGCCGAGGAUGGCGCGGCGAGGUAGCGGCGACAACGGUGGUGGCAAAGGCUGGCCGGCACGGCGGCUGAUGGUUAGAGGAGCCUCGCCCCUCUCGCCUUCCUCUCCUCGUGGCAGCGCGGGUGAGGUGGAGGCCGGCGCCGAGGCAGGCGUGGCGAGGUGGCAGUGACAGCGGCCACCUUUCUCCCGAGGGACCUCGCCCCGCUUCCCUUCUCCUCCUCUAGCACGACGUGGUGUGGCGACCGACACGGCGAGGUUGCGGCGCGGUUGCUGGAUCUCACCGACACCCUCUCUCCCCGGGCCCCCCCUCCUCCAGCGCGGUGUUGGGUGGCGGCCGCUGGCAUGGAGGCAGGCAUGGCUAGGUGGUGGCGUGGAGGCCGGCCAGGCGAGGUGGUGGUGGCGGCGGUGGAGAAGGCCGGUGGCACUGUAGGCGCCAUCAAUUUUUUAUUUUUUUAAUAGUAUAGGUACCGGUUUUAGAACCGGCAGCAAUAAAAAUGAGGCAAAGGUGCCGACCAAUGGAGCCAGUUCCUAACCGGCACCUAUAGGGUUUUCUGUACUAGUGAUCCCUCAACUAUAAAUACCGGAUCAAUUUACCUCCUCGAACGGUUUGAAUGGCGAUUUUCGUCCUACGUGGCAUGUUGAUCGGGUCAUUAUCUGAUGUGGCAACAGCGUGGCGUCGGAAAUAGGAGGAGCGCCGACAUUCAUCCCUCGCACGCCUGCUAUGACGGACGAGUGUGGUCGUGGUGUAUGCUGUCAUGACUUGUCAGUCACGGCGAGCACGCGAGGAACAAGCGGUGUCGCUCCUCCGAGCGGAAGUGGCGUGCAUGCAUCCUGCACCUCCCAACCUCCCCGACACCACCUCCACAUUUGUCGGCCACGGUGGGCGAGCAAGGGACG

Sequence
(OSA-LNCN6403.5):

UUUUGACCACCCACAGCGCCAUCCACACGACAUCCUUUAUCUUAUCCAUCCAUCCCACACUGCCACACAACGCCAUCUCUCUCUCUCUCUCGCCCCUCCUCUCCUCCAGGGAGGCUCUACGGUGCGGCGGUGUAGCCUCGCUAGUCGCCCCUCUCGCCUUCCUCUCCUCGCGGCGGCGCAGGUGAGGUGGAGGCCGGCGCCGAGGAUGGCGCGGCGAGGUAGCGGCGACAACGGUGGUGGCAAAGGCUGGCCGGCACGGCGGCUGAUGGUUAGAGGAGCCUCGCCCCUCUCGCCUUCCUCUCCUCGUGGCAGCGCGGGUGAGGUGGAGGCCGGCGCCGAGGCAGGCGUGGCGAGGUGGCAGUGACAGCGGCCACCUUUCUCCCGAGGGACCUCGCCCCGCUUCCCUUCUCCUCCUCUAGCACGACGUGGUGUGGCGACCGACACGGCGAGGUUGCGGCGCGGUUGCUGGAUCUCACCGACACCCUCUCUCCCCGGGCCCCCCCUCCUCCAGCGCGGUGUUGGGUGGCGGCCGCUGGCAUGGAGGCAGGCAUGGCUAGGUGGUGGCGUGGAGGCCGGCCAGGCGAGGUGGUGGUGGCGGCGGUGGAGAAGGCCGGUGGCACUGUAGGCGCCAUCAAUUUUUUAUUUUUUUAAUAGUAUAGGUACCGGUUUUAGAACCGGCAGCAAUAAAAAUGAGGCAAAGGUGCCGACCAAUGGAGCCAGUUCCUAACCGGCACCUAUAGGGUUUUCUGUACUAGUGAUCCCUCAACUAUAAAUACCGGAUCAAUUUACCUCCUCGAACGGUUUGAAUGGCGAUUUUCGUCCUACGUGGCAUGUUGAUCGGGUCAUUAUCUGAUGUGGCAACAGCGUGGCGUCGGAAAUAGG

Sequence
(OSA-LNCN6403.6):

UUAUCUUAUCCAUCCAUCCCACACUGCCACACAACGCCAUCUCUCUCUCUCUCUCGCCCCUCCUCUCCUCCAGGGAGGCUCUACGGUGCGGCGGUGUAGCCUCGCUAGUCGCCCCUCUCGCCUUCCUCUCCUCGCGGCGGCGCAGGUGAGGUGGAGUCCGGCGCCGAGGCUGGUGCGGCAAGGUAGCGGCGACAACGGUGGUGGCAAAGGCUGGCCGGCACGGCGGCUGAUGGUUAGAGGAGCCUCGCCCCUCUCGCCUUCCUCUCCUCGUGGCAGCGCGGGUGAGGUGGAGGCCGGCGCCGAGGCAGGCGUGGCGAGGUGGCAGUGACAGCGGCCACCUUUCUCCCGAGGGACCUCGCCCCGCUUCCCUUCUCCUCCUCUAGCACGACGUGGUGUGGCGACCGACACGGCGAGGUUGCGGCGCGGUUGCUGGAUCUCACCGACACCCUCUCUCCCCGGGCCCCCCCUCCUCCAGCGCGGUGUUGGGUGGCGGCCGCUGGCAUGGAGGCAGGCAUGGCUAGGUGGUGGCGUGGAGGCCGGCCAGGCGAGGUGGUGGUGGCGGCGGUGGAGAAGGCCGGUGGCACUGUAGGCGCCAUCAAUUUUUUAUUUUUUUAAUAGUAUAGGUACCGGUUUUAGAACCGGCAGCAAUAAAAAUGAGGCAAAGGUGCCGACCAAUGGAGCCAGUUCCUAACCGGCACCUAUAGGGUUUUCUGUACUAGUGAUCCCUCAACUAUAAAUACCGGAUCAAUUUACCUCCUCGAACGGUUUGAAUGGCGAUUUUCGUCCUACGUGGCAUGUUGAUCGGGUCAUUAUCUGAUGUGGCAACAGCGUGGCGUCGGAAAUAGG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

164

LEP:

33.33%

ME_num:

130

MEP:

26.42%

HE_num:

197

HEP:

40.04%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.89

Avg Expression:

35.01

Tip: OSA-LNCN6403 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h2.130855477118120.00403673954947641
2Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi-1.098355375622930.000126299855886371
3Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.358334758767270.00206866426863226
4Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-2.601842166444613.45124421029596e-13
5Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day"1.063427991239240.0360561101170254
6Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256-1.338676573490884.36427027388077e-07
7Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341-1.061635674764363.42013385022796e-05