Chr:
Chr7
Start:
10115180
End:
10116790
Strand:
+
Ref_name:
OSA-LNCN6403
Sequence
(OSA-LNCN6403.1):
GCCCACGAUACGGGUAGUUAUCUCAAAUCGGCUCCGCUAGCCGGUUUAGUUAUGAAAACCCAUCUUGGUUUGGCCGUUUGGCUAGAUUGAGGUCGUUGGUGACUCUAGGAUCACCGCAAAGCUUAAGGUGCUGCGAUCGUGCUUGUCAACUUGUUACAAAAAGUUGCCAACAGAACUGACACCUGUAAUACAAAUAUAGGUAUCGGUUCUAUUAAAAAAAUUGACACCUAUAGUAUAGGUGUCGGUUUUUCAACGGAACUGACACCUUUGAAAAAAACCAAGCCGGCUUUUUUGACCACCCACAGCGCCAUCCACACGACAUCCUUUAUCUUAUCCAUCCAUCCCACACUGCCACACAACGCCAUCUCUCUCUCUCUCUCGCCCCUCCUCUCCUCCAGGGAGGCUCUACGGUGCGGCGGUGUAGCCUCGCUAGUCGCCCCUCUCGCCUUCCUCUCCUCGCGGCGGCGCAGGUGAGGUGGAGUCCGGCGCCGAGGCUGGUGCGGCAAGGUGGCGGCGACAACGGCGGUGGUGGAGUAGGCUGGCCAGCGCGGUUGCUGACGACUGGAGGAGCCUCGCCCCUCUCGCCUUCCUCUCCUCGUGGCGGCGUGGGUGAGGUGGAGGCCGGCGCCGAGGAUGGCGCGGCGAGGUAGCGGCGACAACGGUGGUGGCAAAGGCUGGCCGGCACGGCGGCUGAUGGUUAGAGGAGCCUCGCCCCUCUCGCCUUCCUCUCCUCGUGGCAGCGCGGGUGAGGUGGAGGCCGGCGCCGAGGCAGGCGUGGCGAGGUGGCAGUGACAGCGGCCACCUUUCUCCCGAGGGACCUCGCCCCGCUUCCCUUCUCCUCCUCUAGCACGACGUGGUGUGGCGACCGACACGGCGAGGUUGCGGCGCGGUUGCUGGAUCUCACCGACACCCUCUCUCCCCGGGCCCCCCCUCCUCCAGCGCGGUGUUGGGUGGCGGCCGCUGGCAUGGAGGCAGGCAUGGCUAGGUGGUGGCGUGGAGGCCGGCCAGGCGAGGUGGUGGUGGCGGCGGUGGAGAAGGCCGGUGGCACUGUAGGCGCCAUCAAUUUUUUAUUUUUUUAAUAGUAUAGGUACCGGUUUUAGAACCGGCAGCAAUAAAAAUGAGGCAAAGGUGCCGACCAAUGGAGCCAGUUCCUAACCGGCACCUAUAGGGUUUUCUGUACUAGUGAUCCCUCAACUAUAAAUACCGGAUCAAUUUACCUCCUCGAACGGUUUGAAUGGCGAUUUUCGUCCUACGUGGCAUGUUGAUCGGGUCAUUAUCUGAUGUGGCAACAGCGUGGCGUCGGAAAUAGGGUGGGACCUACCAGCAAGUCUCCAUCAUCUCUCUAUCUCUCCCAUUUUAUUCCUUCCCUUUCUCUAAGCCCGCAUGUCGUUUUCGUUCUAGAGGAGCGCCGACAUUCAUCCCUCGCACGCCUGCUAUGACGGACGAGUGUGGUCGUGGUGUAUGCUGUCAUGACUUGUCAGUCACGGCGAGCACGCGAGGAACAAGCGGUGUCGCUCCUCCGAGCGGAAGUGGCGUGCAUGCAUCCUGCACCUCCCAACCUCCCCGACACCACCUCCACAUUUGUCGGCCACGGUGGGCGAGCAAGGGACG
Sequence
(OSA-LNCN6403.2):
GCCGGUUUAGUUAUGAAAACCCAUCUUGGUUUGGCCGUUUGGCUAGAUUGAGGUCGUUGGUGACUCUAGGAUCACCGCAAAGCUUAAGGUGCUGCGAUCGUGCUUGUCAACUUGUUACAAAAAGUUGCCAACAGAACUGACACCUGUAAUACAAAUAUAGGUAUCGGUUCUAUUAAAAAAAUUGACACCUAUAGUAUAGGUGUCGGUUUUUCAACGGAACUGACACCUUUGAAAAAAACCAAGCCGGCUUUUUUGACCACCCACAGCGCCAUCCACACGACAUCCUUUAUCUUAUCCAUCCAUCCCACACUGCCACACAACGCCAUCUCUCUCUCUCUCUCGCCCCUCCUCUCCUCCAGGGAGGCUCUACGGUGCGGCGGUGUAGCCUCGCUAGUCGCCCCUCUCGCCUUCCUCUCCUCGCGGCGGCGCAGGUGAGGUGGAGUCCGGCGCCGAGGCUGGUGCGGCAAGGUGGCGGCGACAACGGCGGUGGUGGAGUAGGCUGGCCAGCGCGGUUGCUGACGACUGGAGGAGCCUCGCCCCUCUCGCCUUCCUCUCCUCGUGGCGGCGUGGGUGAGGUGGAGGCCGGCGCCGAGGCAGGCGUGGCGAGGUGGCAGUGACAGCGGCCACCUUUCUCCCGAGGGACCUCGCCCCGCUUCCCUUCUCCUCCUCUAGCACGACGUGGUGUGGCGACCGACACGGCGAGGUUGCGGCGCGGUUGCUGGAUCUCACCGACACCCUCUCUCCCCGGGCCCCCCCUCCUCCAGCGCGGUGUUGGGUGGCGGCCGCUGGCAUGGAGGCAGGCAUGGCUAGGUGGUGGCGUGGAGGCCGGCCAGGCGAGGUGGUGGUGGCGGCGGUGGAGAAGGCCGGUGGCACUGUAGGCGCCAUCAAUUUUUUAUUUUUUUAAUAGUAUAGGUACCGGUUUUAGAACCGGCAGCAAUAAAAAUGAGGCAAAGGUGCCGACCAAUGGAGCCAGUUCCUAACCGGCACCUAUAGGGUUUUCUGUACUAGUGAUCCCUCAACUAUAAAUACCGGAUCAAUUUACCUCCUCGAACGGUUUGAAUGGCGAUUUUCGUCCUACGUGGCAUGUUGAUCGGGUCAUUAUCUGAUGUGGCAACAGCGUGGCGUCGGAAAUAGG
Sequence
(OSA-LNCN6403.3):
UGCUUGUCAACUUGUUACAAAAAGUUGCCAACAGAACUGACACCUGUAAUACAAAUAUAGGUAUCGGUUCUAUUAAAAAAAUUGACACCUAUAGUAUAGGUGUCGGUUUUUCAACGGAACUGACACCUUUGAAAAAAACCAAGCCGGCUUUUUUGACCACCCACAGCGCCAUCCACACGACAUCCUUUAUCUUAUCCAUCCAUCCCACACUGCCACACAACGCCAUCUCUCUCUCUCUCUCGCCCCUCCUCUCCUCCAGGGAGGCUCUACGGUGCGGCGGUGUAGCCUCGCUAGUCGCCCCUCUCGCCUUCCUCUCCUCGCGGCGGCGCAGGUGAGGUGGAGGCCGGCGCCGAGGCAGGCGUGGCGAGGUGGCAGUGACAGCGGCCACCUUUCUCCCGAGGGACCUCGCCCCGCUUCCCUUCUCCUCCUCUAGCACGACGUGGUGUGGCGACCGACACGGCGAGGUUGCGGCGCGGUUGCUGGAUCUCACCGACACCCUCUCUCCCCGGGCCCCCCCUCCUCCAGCGCGGUGUUGGGUGGCGGCCGCUGGCAUGGAGGCAGGCAUGGCUAGGUGGUGGCGUGGAGGCCGGCCAGGCGAGGUGGUGGUGGCGGCGGUGGAGAAGGCCGGUGGCACUGUAGGCGCCAUCAAUUUUUUAUUUUUUUAAUAGUAUAGGUACCGGUUUUAGAACCGGCAGCAAUAAAAAUGAGGCAAAGGUGCCGACCAAUGGAGCCAGUUCCUAACCGGCACCUAUAGGGUUUUCUGUACUAGUGAUCCCUCAACUAUAAAUACCGGAUCAAUUUACCUCCUCGAACGGUUUGAAUGGCGAUUUUCGUCCUACGUGGCAUGUUGAUCGGGUCAUUAUCUGAUGUGGCAACAGCGUGGCGUCGGAAAUAGG
Sequence
(OSA-LNCN6403.4):
CUGUAAUACAAAUAUAGGUAUCGGUUCUAUUAAAAAAAUUGACACCUAUAGUAUAGGUGUCGGUUUUUCAACGGAACUGACACCUUUGAAAAAAACCAAGCCGGCUUUUUUGACCACCCACAGCGCCAUCCACACGACAUCCUUUAUCUUAUCCAUCCAUCCCACACUGCCACACAACGCCAUCUCUCUCUCUCUCUCGCCCCUCCUCUCCUCCAGGGAGGCUCUACGGUGCGGCGGUGUAGCCUCGCUAGUCGCCCCUCUCGCCUUCCUCUCCUCGCGGCGGCGCAGGUGAGGUGGAGUCCGGCGCCGAGGCUGGUGCGGCAAGGUGGCGGCGACAACGGCGGUGGUGGAGUAGGCUGGCCAGCGCGGUUGCUGACGACUGGAGGAGCCUCGCCCCUCUCGCCUUCCUCUCCUCGUGGCGGCGUGGGUGAGGUGGAGGCCGGCGCCGAGGAUGGCGCGGCGAGGUAGCGGCGACAACGGUGGUGGCAAAGGCUGGCCGGCACGGCGGCUGAUGGUUAGAGGAGCCUCGCCCCUCUCGCCUUCCUCUCCUCGUGGCAGCGCGGGUGAGGUGGAGGCCGGCGCCGAGGCAGGCGUGGCGAGGUGGCAGUGACAGCGGCCACCUUUCUCCCGAGGGACCUCGCCCCGCUUCCCUUCUCCUCCUCUAGCACGACGUGGUGUGGCGACCGACACGGCGAGGUUGCGGCGCGGUUGCUGGAUCUCACCGACACCCUCUCUCCCCGGGCCCCCCCUCCUCCAGCGCGGUGUUGGGUGGCGGCCGCUGGCAUGGAGGCAGGCAUGGCUAGGUGGUGGCGUGGAGGCCGGCCAGGCGAGGUGGUGGUGGCGGCGGUGGAGAAGGCCGGUGGCACUGUAGGCGCCAUCAAUUUUUUAUUUUUUUAAUAGUAUAGGUACCGGUUUUAGAACCGGCAGCAAUAAAAAUGAGGCAAAGGUGCCGACCAAUGGAGCCAGUUCCUAACCGGCACCUAUAGGGUUUUCUGUACUAGUGAUCCCUCAACUAUAAAUACCGGAUCAAUUUACCUCCUCGAACGGUUUGAAUGGCGAUUUUCGUCCUACGUGGCAUGUUGAUCGGGUCAUUAUCUGAUGUGGCAACAGCGUGGCGUCGGAAAUAGGAGGAGCGCCGACAUUCAUCCCUCGCACGCCUGCUAUGACGGACGAGUGUGGUCGUGGUGUAUGCUGUCAUGACUUGUCAGUCACGGCGAGCACGCGAGGAACAAGCGGUGUCGCUCCUCCGAGCGGAAGUGGCGUGCAUGCAUCCUGCACCUCCCAACCUCCCCGACACCACCUCCACAUUUGUCGGCCACGGUGGGCGAGCAAGGGACG
Sequence
(OSA-LNCN6403.5):
UUUUGACCACCCACAGCGCCAUCCACACGACAUCCUUUAUCUUAUCCAUCCAUCCCACACUGCCACACAACGCCAUCUCUCUCUCUCUCUCGCCCCUCCUCUCCUCCAGGGAGGCUCUACGGUGCGGCGGUGUAGCCUCGCUAGUCGCCCCUCUCGCCUUCCUCUCCUCGCGGCGGCGCAGGUGAGGUGGAGGCCGGCGCCGAGGAUGGCGCGGCGAGGUAGCGGCGACAACGGUGGUGGCAAAGGCUGGCCGGCACGGCGGCUGAUGGUUAGAGGAGCCUCGCCCCUCUCGCCUUCCUCUCCUCGUGGCAGCGCGGGUGAGGUGGAGGCCGGCGCCGAGGCAGGCGUGGCGAGGUGGCAGUGACAGCGGCCACCUUUCUCCCGAGGGACCUCGCCCCGCUUCCCUUCUCCUCCUCUAGCACGACGUGGUGUGGCGACCGACACGGCGAGGUUGCGGCGCGGUUGCUGGAUCUCACCGACACCCUCUCUCCCCGGGCCCCCCCUCCUCCAGCGCGGUGUUGGGUGGCGGCCGCUGGCAUGGAGGCAGGCAUGGCUAGGUGGUGGCGUGGAGGCCGGCCAGGCGAGGUGGUGGUGGCGGCGGUGGAGAAGGCCGGUGGCACUGUAGGCGCCAUCAAUUUUUUAUUUUUUUAAUAGUAUAGGUACCGGUUUUAGAACCGGCAGCAAUAAAAAUGAGGCAAAGGUGCCGACCAAUGGAGCCAGUUCCUAACCGGCACCUAUAGGGUUUUCUGUACUAGUGAUCCCUCAACUAUAAAUACCGGAUCAAUUUACCUCCUCGAACGGUUUGAAUGGCGAUUUUCGUCCUACGUGGCAUGUUGAUCGGGUCAUUAUCUGAUGUGGCAACAGCGUGGCGUCGGAAAUAGG
Sequence
(OSA-LNCN6403.6):
UUAUCUUAUCCAUCCAUCCCACACUGCCACACAACGCCAUCUCUCUCUCUCUCUCGCCCCUCCUCUCCUCCAGGGAGGCUCUACGGUGCGGCGGUGUAGCCUCGCUAGUCGCCCCUCUCGCCUUCCUCUCCUCGCGGCGGCGCAGGUGAGGUGGAGUCCGGCGCCGAGGCUGGUGCGGCAAGGUAGCGGCGACAACGGUGGUGGCAAAGGCUGGCCGGCACGGCGGCUGAUGGUUAGAGGAGCCUCGCCCCUCUCGCCUUCCUCUCCUCGUGGCAGCGCGGGUGAGGUGGAGGCCGGCGCCGAGGCAGGCGUGGCGAGGUGGCAGUGACAGCGGCCACCUUUCUCCCGAGGGACCUCGCCCCGCUUCCCUUCUCCUCCUCUAGCACGACGUGGUGUGGCGACCGACACGGCGAGGUUGCGGCGCGGUUGCUGGAUCUCACCGACACCCUCUCUCCCCGGGCCCCCCCUCCUCCAGCGCGGUGUUGGGUGGCGGCCGCUGGCAUGGAGGCAGGCAUGGCUAGGUGGUGGCGUGGAGGCCGGCCAGGCGAGGUGGUGGUGGCGGCGGUGGAGAAGGCCGGUGGCACUGUAGGCGCCAUCAAUUUUUUAUUUUUUUAAUAGUAUAGGUACCGGUUUUAGAACCGGCAGCAAUAAAAAUGAGGCAAAGGUGCCGACCAAUGGAGCCAGUUCCUAACCGGCACCUAUAGGGUUUUCUGUACUAGUGAUCCCUCAACUAUAAAUACCGGAUCAAUUUACCUCCUCGAACGGUUUGAAUGGCGAUUUUCGUCCUACGUGGCAUGUUGAUCGGGUCAUUAUCUGAUGUGGCAACAGCGUGGCGUCGGAAAUAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
33.33%
ME_num:
MEP:
26.42%
HE_num:
HEP:
40.04%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.89
Avg Expression:
35.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 2.13085547711812 | 0.00403673954947641 |
2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.09835537562293 | 0.000126299855886371 |
3 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.35833475876727 | 0.00206866426863226 |
4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.60184216644461 | 3.45124421029596e-13 |
5 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.06342799123924 | 0.0360561101170254 |
6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.33867657349088 | 4.36427027388077e-07 |
7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.06163567476436 | 3.42013385022796e-05 |