OSA-LNCN6399


Function Link


Basic Info

Chr:

Chr7

Start:

9554269

End:

9573140

Strand:

+

Ref_name:

OSA-LNCN6399

Sequence
(OSA-LNCN6399.1):

GCAGCCGGCCGGCCCGGCGAAGCAAGCCGCCCGAGCCGCCCCUUUUCUCCCUCAAAUCCGCAUCCAAUCCGGCCCUUUUUCUUCCGAUUGUUUGAGGAGUUUUUAUCCUCUCAUCCUCCUCUAUCUUUCCCCUCAAGAAUCGGAGCAAGAGGUUGAGUAUUUUAUCCGAAUCGAGUUCGUUUCGAUUUUAUCCCCAAAAACCGAGUUUAUAUUUUCCCGGAUCGAUUUCUUGCGGGAGGAGUCCGAUCUCUUCAAUCCAAGGCUAUAAAUAGGACCCCCUAGUCCUCCUCUUUCGUUUGCCCCCUCUCCCGUGGUCUCUCGUGCCCCGUAGCGCCGUCGCCACGCCGUCCAAGCCGUCGUCGCCGCCGGCCGACGAACAGCCGCGUCGCCGUGCCGUUUGCGCCGUCGCCGCCGCUUGCCGUCGCCACCGUUGGUUUCGCCAAGAGGUGGAGAAGCUCGGCCGCCACCUCUCCUUCGUCGCCGGCCGCCGUAGCUCGCCGUCGCCGGUUAUCCCGAGCCGCCGCCGUCGCCUCUUCGUCACCGGCCGUCGUCGUUCGUCGUUUGGCUCGUUGUUUCCGACGUUCCGGAGGAGAGCGUUUUCGUUGAGCAAGGUUCGGAAGUGUUUGCGGAAGCCCAAGUUGAAGAUAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACUGUUAAUUCCGCUGCUGUUUUCUUUUCUUUGGAGGGGAGAGGGGAACACACCACAGCGGCGGAGGAGGUCCACGGCGGUGCUGGAGGAGAGCCGCGGCGGAGUUGGAGGAGGGCGGCGGCGGUGGUGGAGAAGGGCCGAGGUUGCGACGGCGCAGAUCUUGGGGGCGUCGCCGGCUGCGGAGUAGGGCCGACGACGCCGACGGUGGUGGAUGGCGCUGGCGGGAGGACCGACGGCGGGCGGUGGCGAGUGACGACGCGAGGAGGAUGCCUUGGAG

Sequence
(OSA-LNCN6399.2):

CAAGCCGCCCGAGCCGCCCCUUUUCUCCCUCAAAUCCGCAUCCAAUCCGGCCCUUUUUCUUCCGAUUGUUUGAGGAGUUUUUAUCCUCUCAUCCUCCUCUAUCUUUCCCCUCAAGAAUCGGAGCAAGAGUUUCCGACGUUCCGGAGGAGAGCGUUUUCGUUGAGCAAGGUUCGGAAGUGUUUGCGGAAGCCCAAGGCAAGUCACACAGAUCCCAAACAACCCUUUGAGCAUGUUGAACCCGUUUAAAGCUAUUAUUUUAUUUCAACCAUGCAUUAUUUUUGAAUGUCAUCGGGUGGUGAACCUUUUCCCCGUUAAUUAAUGGCCGAAGAUGACUUUAUUUUUCUAUGGGUUAUAAUUUGAUUAGUAUGAACCUUAUAUAUUGGAUUGGUUCAGCUAAAUGCUAUAUGUAAGUUUGCUUAGCUAUGCUUAGAAACAUUAGCUAACUAAAGGGGUUAAUUAUAAACUAUAUUAUAUUAUUCUUAUUAAUUAUGGUUAUAUUUGAUGGUUGCACACGUUGGUAAAUCGUGUGAUGUUAAUUAAUUGAUAAUUAAAACCUGGUUAAGGUGGGUUGUGAGCAUAUGGUUUUGAUGGUUGUGCUCAUGACAAUUAAGGACCGGUUCGCGAGCUACUGUUGUGAAACAUUUACCGUGCCAACCACAAGCCAGCAUGGGCAACGGCUUUACCUUUUGUAUAGCAUGGUUCAUUAUAGUGUGCCAGACUGUGAAGCGGCGAGAAGUCCGUGGGGGUCGCUGGGGAGUCCAUGCCUUGUUUAUAAGGGGGUGACUAUGAUCCGGGAAUGGUGCACUGUGGUGAGUUGUGUUGUGCGAAGGGUAUUGUCACGAUUUCCCCCUUUGCAAUGCCGUGGUGGUAUUUCGGGGCAUGGCAACAUGUGUGGAAUCGUGUCUUGUGGGUAUAGUGGUACACCUCUGGCCAGAGUAAAACUAUUCGAAUAGCCGUGCCAGCGGUUAUGGGCGAGUUGAGCAAUGUUUUUCGUGAUUAGUCUCACACUACUCAUAAAUGUUAAUAAUGUGAUAAUUAAUUUGACUCCUGGUUUGGAGGUUUGAUCUGUACGACCGGGGUUGGUUGUUCAGGUUUGGUUGGGCCUAAGCAGCAUGGGUGUGCUGUUCAGUGUUGAUUAAAAUUGAUGAUUAAUUACUCUACUGUUUUACUUAUCUUAAAUCUUUGCUAAAUGCUGCUUUUGCAAAUGAGC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

241

LEP:

48.98%

ME_num:

240

MEP:

48.78%

HE_num:

10

HEP:

2.03%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.78

Avg Expression:

2.20

Tip: OSA-LNCN6399 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-1.600537827744180.0174353369035094
2Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day1.701512341877750.0120661845661006