Chr:
Chr7
Start:
9554269
End:
9573140
Strand:
+
Ref_name:
OSA-LNCN6399
Sequence
(OSA-LNCN6399.1):
GCAGCCGGCCGGCCCGGCGAAGCAAGCCGCCCGAGCCGCCCCUUUUCUCCCUCAAAUCCGCAUCCAAUCCGGCCCUUUUUCUUCCGAUUGUUUGAGGAGUUUUUAUCCUCUCAUCCUCCUCUAUCUUUCCCCUCAAGAAUCGGAGCAAGAGGUUGAGUAUUUUAUCCGAAUCGAGUUCGUUUCGAUUUUAUCCCCAAAAACCGAGUUUAUAUUUUCCCGGAUCGAUUUCUUGCGGGAGGAGUCCGAUCUCUUCAAUCCAAGGCUAUAAAUAGGACCCCCUAGUCCUCCUCUUUCGUUUGCCCCCUCUCCCGUGGUCUCUCGUGCCCCGUAGCGCCGUCGCCACGCCGUCCAAGCCGUCGUCGCCGCCGGCCGACGAACAGCCGCGUCGCCGUGCCGUUUGCGCCGUCGCCGCCGCUUGCCGUCGCCACCGUUGGUUUCGCCAAGAGGUGGAGAAGCUCGGCCGCCACCUCUCCUUCGUCGCCGGCCGCCGUAGCUCGCCGUCGCCGGUUAUCCCGAGCCGCCGCCGUCGCCUCUUCGUCACCGGCCGUCGUCGUUCGUCGUUUGGCUCGUUGUUUCCGACGUUCCGGAGGAGAGCGUUUUCGUUGAGCAAGGUUCGGAAGUGUUUGCGGAAGCCCAAGUUGAAGAUAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACUGUUAAUUCCGCUGCUGUUUUCUUUUCUUUGGAGGGGAGAGGGGAACACACCACAGCGGCGGAGGAGGUCCACGGCGGUGCUGGAGGAGAGCCGCGGCGGAGUUGGAGGAGGGCGGCGGCGGUGGUGGAGAAGGGCCGAGGUUGCGACGGCGCAGAUCUUGGGGGCGUCGCCGGCUGCGGAGUAGGGCCGACGACGCCGACGGUGGUGGAUGGCGCUGGCGGGAGGACCGACGGCGGGCGGUGGCGAGUGACGACGCGAGGAGGAUGCCUUGGAG
Sequence
(OSA-LNCN6399.2):
CAAGCCGCCCGAGCCGCCCCUUUUCUCCCUCAAAUCCGCAUCCAAUCCGGCCCUUUUUCUUCCGAUUGUUUGAGGAGUUUUUAUCCUCUCAUCCUCCUCUAUCUUUCCCCUCAAGAAUCGGAGCAAGAGUUUCCGACGUUCCGGAGGAGAGCGUUUUCGUUGAGCAAGGUUCGGAAGUGUUUGCGGAAGCCCAAGGCAAGUCACACAGAUCCCAAACAACCCUUUGAGCAUGUUGAACCCGUUUAAAGCUAUUAUUUUAUUUCAACCAUGCAUUAUUUUUGAAUGUCAUCGGGUGGUGAACCUUUUCCCCGUUAAUUAAUGGCCGAAGAUGACUUUAUUUUUCUAUGGGUUAUAAUUUGAUUAGUAUGAACCUUAUAUAUUGGAUUGGUUCAGCUAAAUGCUAUAUGUAAGUUUGCUUAGCUAUGCUUAGAAACAUUAGCUAACUAAAGGGGUUAAUUAUAAACUAUAUUAUAUUAUUCUUAUUAAUUAUGGUUAUAUUUGAUGGUUGCACACGUUGGUAAAUCGUGUGAUGUUAAUUAAUUGAUAAUUAAAACCUGGUUAAGGUGGGUUGUGAGCAUAUGGUUUUGAUGGUUGUGCUCAUGACAAUUAAGGACCGGUUCGCGAGCUACUGUUGUGAAACAUUUACCGUGCCAACCACAAGCCAGCAUGGGCAACGGCUUUACCUUUUGUAUAGCAUGGUUCAUUAUAGUGUGCCAGACUGUGAAGCGGCGAGAAGUCCGUGGGGGUCGCUGGGGAGUCCAUGCCUUGUUUAUAAGGGGGUGACUAUGAUCCGGGAAUGGUGCACUGUGGUGAGUUGUGUUGUGCGAAGGGUAUUGUCACGAUUUCCCCCUUUGCAAUGCCGUGGUGGUAUUUCGGGGCAUGGCAACAUGUGUGGAAUCGUGUCUUGUGGGUAUAGUGGUACACCUCUGGCCAGAGUAAAACUAUUCGAAUAGCCGUGCCAGCGGUUAUGGGCGAGUUGAGCAAUGUUUUUCGUGAUUAGUCUCACACUACUCAUAAAUGUUAAUAAUGUGAUAAUUAAUUUGACUCCUGGUUUGGAGGUUUGAUCUGUACGACCGGGGUUGGUUGUUCAGGUUUGGUUGGGCCUAAGCAGCAUGGGUGUGCUGUUCAGUGUUGAUUAAAAUUGAUGAUUAAUUACUCUACUGUUUUACUUAUCUUAAAUCUUUGCUAAAUGCUGCUUUUGCAAAUGAGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.98%
ME_num:
MEP:
48.78%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.78
Avg Expression:
2.20
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.60053782774418 | 0.0174353369035094 |
2 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.70151234187775 | 0.0120661845661006 |