Chr:
Chr7
Start:
9531645
End:
9542312
Strand:
-
Ref_name:
OSA-LNCN6386
Sequence
(OSA-LNCN6386.1):
CUGGCGGAGGGGAUGGUGACGGCGGCGGGGAUGGUGAUGGGAUGGCGACGGCGAGGCGGAUCCGGCCGCGCCAGAGGCGGAUCCGGCGCCUGGAGGAGGAUCUGGUCCGCAAGUGGCUAGAUCGGACGAGGACGAGGACCGCUGCGGCGACGGCGGCGGCGGUGGCAUGUUGCUCGCGGUGACGACAGCGUGGAGCCCGUGGUGACAGGAGCGACAGCGGAUGGCCGGCGGCGCCAGCUGGUGGCUGGUUGGCCGGCGGCAGCAGUGGCUAGGCAGUGGUGGCAGCCGGCGUGGGGACCGCGGCGCGAGGUGGGGCGGGGAGGCGCGACACGGCUAGAGGCUGCGUAGGUCGGCGAGAUGUGGGCAACGGGGCGGUGGGGUUGGCCGCGGCGCGAGGCUUGGCUGGUGGCGGCAGUGUUGGUGCCGUUUGUAGUGUGGUUGGCGGAGGCAGUGGCCGGCCCCACAGUGGUGGCAGGCAGAGGCUGGCCAGCGUGGGGGGCGCUGAUGCAGUGUUGCCCACGCGCCGGCGGAGGUUAGAUGGCGGUGGAGCAUCGGUGCGUCAUCGGGGGAUAAGUUGGCGGUGGAUGUCGGGUGAAAACACAACCCGGCUUUGGCCGGGCCGACAACGAUGGCGCUCUGGCGUCACUAUCCCUCCUGAGGGCGUUGUCGUGCUGCCUCACCCCCUCUAGUGGGCUGCCGGGUGAAAGCUCAGUUAAGGUUCUUGUGACCUUGACGGGCGGCGGCGGCGAUGCCUUCAUCGUUUUUCUCCCUGGUGACGUCGUCUUGGCAGCACCCUUGCCACAGCCACACAAAUAACUAUUGCGAGCUCGCUUUAGAGUCUCUUCCUCUUGUAUCGACAUCCUAGUUUAUACAAGCUGGCCGCGUCGGGGGGCCUAGGGGGGAGAGCGGUUCCAUCUUCUCUCUCACCCUCUCUCCCUAAAUCCCCGGGAUGUGGAUAGAGCGGGUUUUGUGUUGGUUGUAAGGGUUGGAUUUUGGGUGUUCCCUGUUGUAGUUCUUUUGUUGGCAUAGCAACGGUCGGUCAUGCUUAGCGGUGGCCGGUCCGGUGCUAGCCUUCUCCUGGGUUUGUGUUCGGCGCUGUCGGUGUGUGGGUGGUGCUAUACUUUUUUCUUUUCCUAGUUACAGCUUUCUAGGGUUGUAAUCUUGUAAUUUUUUUUUCUGCUCUAUCAAUAUGUACUUUGCAUUGUCUUGUGCGAGUCGUUCAAAAAAAAUUGCUCCCACCUAGUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
58.33%
ME_num:
MEP:
34.96%
HE_num:
HEP:
6.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
0.95
Avg Expression:
19.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 3.71420960919274 | 8.20568846120798e-08 |
| 2 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 3.08358751932944 | 0.00720349712139797 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 4.19143041534224 | 9.46589643168912e-11 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 2.08309406491845 | 0.00860636886315726 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.05107463201688 | 0.0104356860952207 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 7.43887340240099 | 6.47233058966344e-45 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 5.31800982315241 | 1.67896605197353e-19 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.56005674437641 | 2.50927455030633e-44 |
| 9 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 8.16010805234114 | 1.6815036348432e-06 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.46471835381346 | 0.0430374079304351 |
| 11 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.46461936028368 | 0.0433649282502526 |
| 12 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.46451640666202 | 0.0431202853321252 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.82500324219825 | 0.0289577325700827 |
| 14 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.88931000114984 | 0.029949434791849 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.78506841230755 | 0.0285465055936874 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 2.39021033948912 | 0.0275194998847059 |