Chr:
Chr7
Start:
9482055
End:
9482649
Strand:
.
Ref_name:
OSA-LNCN6380
Sequence
(OSA-LNCN6380.1):
GAGCACGGCUAUUCGAAUAGAUUCAUUUAUACUUUACUGCAGUAAAUGUACGCUUUACCCGCAGUCCACGACUUGCCAAUAUUCAUUAGCUUAGUCGUAGCCCAGCCUUAGGUUAUUAACAAUAGAGGCACCUGUUCCAUGAACUCUAGUCCCCAUGCGCUCUGAACGUAACGUUAUCAGCAGCGAGAGGAGUUCUGGCGUUCCCGAGGUUUUUAGAGAGAACUGGUUGAGAGACCCCCGUCAUCUCAAUCAGGUUUUUCACAAUAUACACACACAGCGAUCACAAUAUAAUCAAGAUAUUUACCUGCGCCUCGGUAAAUAUCACAUUUGCCCUUCGCGGCAUAAGUUUGCCUCCUUCGCGAGGACUUACAUAAGAACCACUGUACAGAGGUACCACAUUGUUAAUUAACCUAAUAACUAGGUCUGUCCCCAUUCUAGAAGCUGCGGUCGUACUCGUUCGUUUGACAUAAGUAUUUGGUGGCAAUUAUAUCGAUCGAGAUAGUACUAGCCACCCGGAAAUCAACCAAAUCUUACGUAUUGUCCCAAUCUAAGUUCAUUAAAUUUUAUGCAUAUUCUAACUAAGCAUGGCUAAGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
73.78%
ME_num:
MEP:
23.37%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.96
Avg Expression:
11.15
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 5.32915405562557 | 3.78376775501918e-05 |
2 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 4.05734693397032 | 1.43273871165022e-11 |
3 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.82432619935454 | 3.00058715224572e-06 |