Chr:
Chr7
Start:
8872269
End:
8873273
Strand:
+
Ref_name:
OSA-LNCN6360
Sequence
(OSA-LNCN6360.1):
CUGCAUUCAAUUCAAUUCAAUUUAUUUUUUGACAUACAUGACGCUAAUUAAUUCAUUGAUAGCGUCACUAAAUAACCAGUCAUCUUUGACGGGUGGUAACUUAUAUAUCUUUUUAACGGGUAUCGACUGAUGAGCAUGCGCAAUUUUUAUAGGUAGUAUAUAUAUAUAUAUAUAUAUAGCCAUGUGUGUAAUAAUAAGAAAUAAAUUUACAUUUGUUCAAUUUUGUUGUAGAUCAGUUUAUUUAUGGUCCUUAAAAAAGAAUUACAUUUUCUAAUGUUGACUUGUAUGUGUCUAGAAAUGUUUAAGUAGAGAUACAACGACAUACGUAAUGAUCUAUGUUAAAUUAUAUUUACAUUUUACUUCCAUGCAAGAAAAAAUAUAUAUAGUGUACUGAAGAACUUGGCUCUUCGAUGUCUGUAAAGAUCAAGCAAGUACGUUACUGCAUGAUUUUGACACAUCAUGCCGACGACGCAAUACAUGAUUAAUCUCUGGUACUACUGCAAGACAGAAAAAUGAUGCAGGACGUACAUCUUGGUCGUCGUUUUCAUAUGUACGACGAUCCUCUAUAUGCAUGGCUGGACCAUAUAUAUACCUGUCCUGCAUUGGCCCCUGCUGUGCUAUAAUACUAUUGCAUGAGCUAGGUAGCUAAUGAUUCAAUUCAAUUCACUGCACAUCUCGAUCUAUAUUAUGCACACACUGACCUAUAGAACAUGGUGUCCUGUAGGGGUUGCAUGCAUGCAGGGUGAAGGACCAGCUAGCUAGCCAACUAUCAUCAUUAAUUUAUAUUCUUUACCAACAAUUAUUGAAACUCUAAUUUCAUGCAUGGACAGAUAGAUGCAUAUAUUUAUGUUACUUGUACAUUUGCUGCCAAUUGAGAUUAAGAAACAAACUAUAAUUAAGCAAUGCAUAUAUAUAGUGUACGAUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
63.41%
ME_num:
MEP:
27.24%
HE_num:
HEP:
9.15%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.92
Avg Expression:
10.43
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.04025150300331 | 0.00147342500444301 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.17130035080922 | 4.5708247863576e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.01559717750532 | 2.55039202457751e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.86138574620386 | 0.0339412418996402 |
| 5 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | -5.72564212059458 | 0.00351554502804189 |
| 6 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -1.53321460687236 | 0.000328919328376229 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.79753584820142 | 0.0446958373961278 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.81618452178955 | 1.97784285215665e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.20011788252001 | 0.00100021770674535 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 6.15719637409976 | 2.50315361677001e-06 |