Chr:
Chr7
Start:
8126092
End:
8126863
Strand:
.
Ref_name:
OSA-LNCN6339
Sequence
(OSA-LNCN6339.1):
GGGAUCCCUCUCCUUCUCCCCUCUCUUCUCCUCUCUCUUCCAUAUCCCAUCUCUUCCCCUCUCUCUUCCAUAUCCCAUCUCUUCCCCUUUCUUCCCAAUCCAGGGUGCUGGGAUGGGCGGCGGGGGCCAAGAUCCGAGUCCUGCUUUGUUUGUAUCGGCAGCGCGAAGCUGGACUCCACCGAGGCAACGGGGCUCUCGCUCUCCACCUCCAUGGCGGCGGCGGAUUCUUCCUUCCCCUUAGGUGCAUCGGCGCUAGGAGGGAAUCAACGCUUGUGAAGCUGCGCCAAGUCCUCAUCGCCAGAACAGUGGUUUGCGGUUUUUACUGUAGCAACAGUAACAAACAGUGAAGUACACUGUGCAAGAGUAGUGUUACUGUGGUAUACUGUAGCGAUCGAUCUCGUUCGUUCACUGUAAAUCGGACGGCUAAGAAUACCCUAAAGUCACAAUACUAUGCUUCUCUGACUUGAUCUCGUUCCAAUCGCGUCCCGCUCGUACAUGCGCUACUGGAGUUUGACGAUUUCUUCUGCGAGUCCUUCCCUGGCAGAGGGGAGAGACAGAAAGAGUAGAAGGGGACAGAGAGGAGGAAGAAGUGGUAGUCACUAACAUGUGGGAUCCGCGUGGGUCUCAUGUUGACUCAGCUUGUCACGUCAGCUAAAACCGGAUGUAAUACUACCUAGGAUCUCACAUAAUCUGGUUUUGUAAAUUAAGGGACCUAUUAUAUAUAGUAUUUCGGUUUAUGGAGGAAUUUUAGACUCGGCGACAAAUUGAGGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
62.8%
ME_num:
MEP:
35.57%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.82
Avg Expression:
2.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.15346236093456 | 2.83004926779062e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.86530355546445 | 5.75350510275997e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.58446826209916 | 0.00146427828431262 |
| 4 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 3.51580813215721 | 3.54006771221521e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.81278542066292 | 0.0156649426955043 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.04028569571566 | 0.00574206015460687 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.49306992781877 | 1.83905639195263e-05 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 5.07437770705817 | 0.0118561561766261 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.41225990314311 | 0.0366026752913551 |