Chr:
Chr7
Start:
7923186
End:
7923955
Strand:
+
Ref_name:
OSA-LNCN6334
Sequence
(OSA-LNCN6334.1):
CUCUCCUCUCUCUCUGUCUCAACUAUCUCUCUCGGUCCCUCUCUCUCUCGGCUCUCUCAGUCGCAGCGGCGUGCGGCGGCGGGAGGAGAGGCGGCAGCGAUGGGUAGCGCCGUCCCCUCCUCCAGAUCCGGUGGGAGGGGAGGCAGCAGCGGCGGGUGGCGUCCUCCCCUCUGCCAGAUCUAGCAGGAGGGAAGGCGGCUGCAGCGACGUGCGGUGGUGGGCGGUGGUAGGAAGGAAGGCGACAGCGGCGGGCGGCGUGCUAUUCUUCUGCAGUUCCAUCCUUGGCGAGGGGAGGUGGUAACGGCGGUGCUCGACGUACUGCUCGUCUGCAGCUCUAUCCUCUCCAGAGGCCGUCGUCCAUCUUUUUUGUGUUUGUAUUAGUGUUGAUUCUGGUGAUGCUCUGGGAUGUUUUUGAGUUCUUGGAUGCCGAUUAAUUUGAUGAAUUAAAUGAUGGGUGAAAUCGGGUGAAGGGGAGUUGCUCGAUACAUUUUCUUGAAUUGAGCCGAUGCCUCGAGCCAGCUUUUUUUUAUUGUUAUUUUGAAACCUCAAAGGUGUCGGUUCAAAACCGACAUCGGAACCGGCACAUAUUUUUCCUUCACAUGCUUUCUAGGUGCCGGUUGAAAAUCCGGCAUCUUUAUAGGUUCCCAACCGACACCUAUUUUCUUUUCUGAGGUAGUAAUAGUUGCAUACUUUCAAAAAGCAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
22.56%
ME_num:
MEP:
33.94%
HE_num:
HEP:
43.29%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.71
Avg Expression:
19.30
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.74123910442389 | 2.94984228235329e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.49400397807706 | 0.00268649696024155 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.65496420685258 | 2.01746295531882e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.18932768816086 | 9.52832770670806e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.26650645298251 | 0.000188328118130408 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.08664280776759 | 0.00028008874751175 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.16960162240159 | 0.0223163623691684 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.20332511876678 | 1.21732474414005e-05 |
| 9 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.53443225530238 | 0.0310948922717088 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.0298045993093 | 1.55186920049416e-21 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.69866739493861 | 3.88005555907009e-07 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.15646620713151 | 0.000581454137085994 |
| 13 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.55155898584197 | 0.00299258204293172 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.27272036936422 | 0.0114144668206217 |
| 15 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.34563937676267 | 0.0031446047067999 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.35037982180024 | 7.35151894560204e-09 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.8253249974248 | 5.60781129624439e-08 |
| 18 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.31547201978943 | 6.62725026423799e-06 |
| 19 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.31539179604239 | 6.83096231908569e-06 |
| 20 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.31533517750793 | 6.68865609381515e-06 |
| 21 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.62774794238743 | 0.000313171197201384 |
| 22 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.51271308851159 | 5.235167437044e-51 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.57701411273406 | 5.86561118169988e-06 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.43594753035285 | 1.2141469748279e-09 |