Chr:
Chr7
Start:
7414218
End:
7420195
Strand:
-
Ref_name:
OSA-LNCN6323
Sequence
(OSA-LNCN6323.1):
CCCCCAACUUCUGACAAGGAUGUGAAAACUGAAAAGAAAUCUGUCAAAACAUGUUCCAAGUGAAAGAUCAAAUUUUCAGACAGCCCGGGAACUUAUUUCAAAGGCAAUUACUACUGGUAGGAGUAAUAAUCAUCACCAAGUACACACAGCACUGUUUUGCAAUUUUAUGGCAAAAAAUAAAAUCAAUUCAGCAAACGAAGAAAAGAAAGAGAGAAAAUAAAGCAAACACAGUGAGAAACAUGGCCCCCAUUCACAGCAAAGAGAAAAAAGAAUGGUGAAAUAAAGCACAAUAAACAUGUGCAACACAGCACAAGCGCACACAUGGACCAGUUGAGCUGAAAUAAAAUAUGCAAAUCCAUAAACCCCCACGGGGCAAGCACAAGAACGGCAUUACACUGCACCCACAACCCACAAGGCAAGAACAGAGUUCGAUUGCACUUGCACCCAUCGAAUUAUACGCUCCAAAGGGAGUACUAGUUUACAACCAGCCAGCUGCCGGCUAAAAAAAAAAAGAGGAACGAAUACACACGGUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.24%
ME_num:
MEP:
62.8%
HE_num:
HEP:
34.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.80
Avg Expression:
19.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.31444958897176 | 0.0105176257968704 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.42522605906595 | 0.0306053103859094 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.08346000207995 | 0.0350084599459256 |
| 4 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.38912741280632 | 0.047123491557003 |