Chr:
Chr7
Start:
7052191
End:
7054417
Strand:
-
Ref_name:
OSA-LNCN6310
Sequence
(OSA-LNCN6310.1):
CCGACAUCUAUCCAUACCGAGCCGAGCCGAUCAGGCCGACGCAUCAGCCUCAUCCUUAUAGCCUCAGACGUCUCAUCCUUAUCGCCUCGCCUCUCGAUCCCUCUCGUUCUUUCUCGCCUCUCUCUCUCUCUCGCCUCUCUGUAGCGCGCGACAGCGGUGGGGCAGCGUCCUGGCAGAGGCGUCAGCGGCGGCGAGAUGGGAGGCGACGGCGCCCUCCCCUCCGCCGGAUCCGGCGGGAGGGGAGGCGGCGGGCAACGGCGGGCAGUGGCGCGCUCCCCUCCGUCCGAUCCGGCGGGAGGGGAGGCGGCGGGCAGCGGCGCGCUCCCCUCCGCCCGAUCCGGCGGGAGGGUAGGCGGCGGGCGACGGCGGGCAGCGGCGCGCUCCCCUCCGCCCGAUCCGGCGGGAGGGGAGGCACAACAUGGCCCGCCGGCGAUGAAACAGACGAAGUAGAUAAGCCUUGGGCCGCCGGCACAAGAUUUUUUUAGAUGUUUUGGUGGAUUUGUGAAUGAUUUUAUUGGAGUAUGUUUGUGAUGUCAAUCAAUUUUGGUGGAGAUUUGUGGGUGACUUGAGGAUUUUAAUUUGAUUUGGGCGCAUGGCGAUGGUGCUCAGUGAGGUCGGCUCCAUUCGAGCCGGCUCUCUGUUUUUUUUUUGGUUCGAGCAAUGCUAAAGGUGCCGGUUUAAUGAUUGUCAUAGGUGCCAGUUUUUAUUAUUAGUGCCGACUAAUAGGUGUCGGUUGGGAAACCGGCACUUAUAGCCGGUUUCCAACCGGCACCUAUGCCCCUUUUUUUAGUAGUGCUUGUUGCCAGGCUUUACAUAGGCUAUCUUUUCCUUGUUAUUUCUGCUCAUUAGUUUCUCCUUCCAUUUUCUCUGACAGAGCGGAUACCCCAUAAAAUUAAAGAAAUCUGAUGAUCCAAGGAAGAAGAAACUACAAAGUGAGCUAGCGUUCAUACUUCAUAAAAGGACUGAGACUGAGUUCUUUCCCCAACUUUUCAAUCUAGAUCACUUCCCUCGUUUUCCGUGCGUACGCUUUUCAAACUACUAAACGAUACGUUUUUUUUCAAAAAAAAAUUCUAUACGAAUGUUGUUUUAUAAAAAACCAUAUUAAUCUAUUUUUCAAAAAAGUACUUAAUUAAUCACAAGAAAAUACGUCACUCUAUUUUGCGUGCGCGAGAGGUGAGUUCCCAACCUCACCUCCCGAGCACAGCCUAAUAGGUUUUAUGAAACUCACACUUUCUUUUAAAGACUGUGCACAUGCACCUGAUUCUCUGCACUGAGAUUUAAGUCUUCCAUGUAUUCUGAAUACUAUCUAAACUUACCACGUAUCACAUAAAAAAUAGGGUGUACAGUACUAAGCAAAUAAACAACUUAAACAAGCCUACUGAUUACUGAACACCGGUAGAAGAGGAACAAGGUUUUGCGCAGGACACUGCAUGUGUAUAGUGGUGCGCACAGAGUAAAUCUUAUACUCCCAAAAUGGUUCCUAGUGCUUUGCAUGUUGUAUUGUAAUAUGUUUUCUUCUAGUUUUCUGUAAUACUAGUGCUGGAUAAAUUUAUUGUCCGAUCCGCUCCUCUUUUCUUUUUUUUUUGUCAGAUGAAUGUACUGAAGAUGGGAUAGUUCAGGCUCAAAACAAAAUGUACACAGUCACACAAUUUAAUAACAUGCGGUUAUCUAAAAAAUAAUAGCAUGCACAUAAUGCUCCGUAAAGCAACAUAAUAUUGUUCCGCGUUAAACGAUAUGUAACCAUAGCCCUUGAUUAAGAUAUCCACUCCAGACCCAUUUUCCUAUCCAGCUAUCAUCUUGCCUAGCUUUUGCUCCUAUGCUCGAAAUGCAAAUGCCAUACUUGUACACAUCUUGAUGCACUAUGGAGGAAGGUACCAAUAUACCAAUAGUCUACAAUCUGAACAUAAGGUGCAAAAGUACUCCAUUUGCCUCACGAACCGAAUCGUAAGUUCCCAUCGCCUCCUAAACCUACUUGCUAGGCUUUAUGCACCUAAGAAACAAUACUGGCUGGUGGAUGGAACAUCAAUCCAUACGAUAUAGAGAAGGGCGCCCAAUAAGAUGACUAUAUGUAACCACUGUGAGGAGAUGAGUACAGUCAAGAUGAUGACUUUAUAUAUGUAGGUGGAAACAAAGGAAAUAUAGUAAAUGGUUUCUAUGAUUAUUGCCAUCCCAUUUACAUUUUUCUAGCUAAUGGGAAUCCCCGUACGUAAUGCCAUUUGCAUAGGCA
Sequence
(OSA-LNCN6310.2):
CCGACAUCUAUCCAUACCGAGCCGAGCCGAUCAGGCCGACGCAUCAGCCUCAUCCUUAUAGCCUCAGACGUCUCAUCCUUAUCGCCUCGCCUCUCGAUCCCUCUCGUUCUUUCUCGCCUCUCUCUCUCUCUCGCCUCUCUGUAGCGCGCGACAGCGGUGGGGCAGCGUCCUGGCAGAGGCGUCAGCGGCGGCGAGAUGGGAGGCGACGGCGCCCUCCCCUCCGCCGGAUCCGGCGGGAGGGGAGGCGGCGGGCAACGGCGGGCAGUGGCGCGCUCCCCUCCGUCCGAUCCGGCGGGAGGGGAGGCGGCGGGCGACGGCGGGCAGCGGCGCGCUCCCCUCCGCCCGAUCCGGCGGGAGGGGAGGCACAACAUGGCCCGCCGGCGAUGAAACAGACGAAGUAGAUAAGCCUUGGGCCGCCGGCACAAGAUUUUUUUAGAUGUUUUGGUGGAUUUGUGAAUGAUUUUAUUGGAGUAUGUUUGUGAUGUCAAUCAAUUUUGGUGGAGAUUUGUGGGUGACUUGAGGAUUUUAAUUUGAUUUGGGCGCAUGGCGAUGGUGCUCAGUGAGGUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.82%
ME_num:
MEP:
34.35%
HE_num:
HEP:
26.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.73
Avg Expression:
10.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 3.62394299464797 | 0.000135642215679354 |
| 2 | Azucena // root // control--/--Azucena // root // Al | -1.15417698215995 | 0.000105145161861457 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.15398293434028 | 0.0200898546104883 |
| 4 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.6841309660657 | 0.025560524906415 |
| 5 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.23164845061691 | 0.0129263576832254 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.43918067527656 | 3.09481935036986e-17 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.47418194549816 | 2.20588089527244e-10 |
| 8 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 3.37340363406148 | 9.00372724436892e-08 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.90338600201603 | 5.83418688778429e-17 |
| 10 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.15124748249482 | 0.0356920918839666 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.38156875515807 | 1.9235176876514e-98 |