Chr:
Chr7
Start:
6867569
End:
6874002
Strand:
-
Ref_name:
OSA-LNCN6300
Sequence
(OSA-LNCN6300.1):
CUACACUAUUCCAUUUAUAAAAGUGCAAAUUUCUUCGCAUUGCACCCGUAAAAACUGACAAAAAUAGAAGCAAAUGAAAGACGAGAACAAGCAUUACACCUUUUAUAUGAAUCAAAAUCAAAGAUUUAAGGUCGAAAACCUCCCCUCUUAAUGUUUGUAAGUCUAGGAGAGAGAAAACGUCGGAAUAAAUAGGGCAUGGUUGGGCUGGGGUGUAUAUAGACCAACAUCAUCACGUGCGGUUGGAUUAAACAGCCCGCACGGGAAGAUGCAUUAUCCUGUGCGGGCAUCUUAACCCAACCGCGCUGGAUAAUCGCAUUAUCUCGUGCGGUUCGGUUAAGACGCCCACACGGGAUAAUGCAUCUUACCGUGCGGGUGCUGGCCCUGCGUCGGUCCUCCGGUUUCCAGGAAAAUGUUUUGUGUAGUAGUGUUCUUUUCUUUUAUUGGACAGUGAUGGGACAAGAGGCCAACCCAAAAUAUAAGGAAACACCUCUGAUGUUGGCAUGGCAUUGUUAGGAAAUCGCAUGGUCUAGAAACUCAUGCAAAUGGACACUUCAUCCUCGCAAAAUUCUCGUAGACAUGGUGAACCGAAAGUAUCUGUUGCUAGUGUUACCAAUGUUACACUGGUUUAAAAUUACCGAUAAAUAUGCUAAUAUCUCGCUCUUUCAGAAGUACCAGACAUUCUCCUACCAAUAUAAUAAUUAACAUACACUUCAGAGAGUGCACAGAUAAUAGGAUGGACUCAAUUCAGGAGGUUGUAUUUCUGCAAACAGAUAUUAAGCUCCUUUUCAAUAUAUUGAAAAACACAAGCUUCAGAUGCAUCAACUGUAACAUGAGUAUGUGUAGCUAGCCUCUCCAGUGCCCAAGAACCAGUUCAAUGAUUGUAAGCUGCCGCUGCAAAAUGUGACAGACCAAAUGCAUCGUACGUAUCAUCGUUCAUCAUCCCUAGACACUGCUUCUCUAGAGAAAUCGAUUUCCUAGAUUCGUCCCAAGCCUAAUUUGGCUGCUGUUUUCUUUGAGUCAUAGUGGCCAAUCGCCAGUAAGAAUAUAUAGGCAGCAUUGCAUGCAUGAGGAGCUUAUCACUUGAAUUAUAUAUUUCGUAUAUACGUGAACCGAGAAUGGAACCUACAAGCUCCCUUCUGUAUCUUCUGACGCUAGCUAGGGUCUUCAGUUUAUAAAUAGAACAAUUUUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
98.17%
ME_num:
MEP:
1.42%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.95
Avg Expression:
0.74
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.75260596206455 | 0.0439863165522729 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.99928204719195 | 0.0228994263521866 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.80819321709905 | 0.0277173413573688 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.28525510477683 | 0.0121093223513964 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.67337839346775 | 0.0135525345101705 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.41968465952251 | 0.0073776323591811 |