Chr:
Chr7
Start:
5727963
End:
5729142
Strand:
+
Ref_name:
OSA-LNCN6264
Sequence
(OSA-LNCN6264.1):
UGUGAAUAAAAAAAAACCAGAACUGCAGAAACACACAACGGACAUGUCUCAAAUUUCAUAAGUUAUUGAACAGAGGAGUAAAUUAUAAAUAUGAUUGAUGAUUUCUCAAACCAACAGGUGGUGAAUGUAAAAGGUGACCAUAACUCUCAGGGAAAAAAAAGCAUUCACCAACCUACCACUUAUUCAUAUCAGUUAUAAAUAACUAAACACCUGCCUUUCAUUUUUAUCAGUGCCACUUCGUUGUUUUCUUCCUUUCUACAGUUACAAGAACUAAACUUGAAGCAGUUGCCACACAUCAGUUAAAGAGCGAGGAGUAAUCUCUACCACAAAAUGCAUGGGGAUGGGAUGCAUUGAGGAAGAUAAGAAAAGGCACAACGAUAAUACCGGGAGUGUUUCAGCAUCGAUCGGUCCUGAUUCCUGACCUUCUUUCAGCAUGAAGUGCGACACUUGCAUCUCACACUAGGACAGAUGUCAUGACCUCAGACCAUGACGGAAUAACUACAGCCGGGAAGAUAGCCGGGCAGCGUCGGCUCCUGGAGAAGGGAUGUAGAUUCAGGCUAAGGAGAAGAACAUUGCUGGGAGAGAGAGAUUAGAUUAAUUGAUAUUCAUUGCUUAAUUGAUAAUAGAUACAAUCCCAUCCUUAUAUAGAUGGUACAAACUUGAUCCCUAAGUAAGAACUUAAUCUUAUCCUAUCUUAUCUCUAACUACUAACUAACUAAUAAUCUUAUCUCUAACUUGAUUGGUUUGGGCUGCCUAUAAACCUUGACCUACGGCCCAAUGCCCAUAACAUUGUGUGAGGUUCAACUCAUGAGCUCGUCAACCAAAGAGGUAGCUAACAUAGCUCACUCUAGGUUAAUGAGAAAGACGAAUUUGGAGCAGCAUAUGUUUCUUUUCCGGUUUCUUUGCAUGGGAAAUGUGAAAGAAGGUUCUGGCUGAUUUUUUUUUAUUGGCAAUGACACAACUGUUCAAAUCACUGAUGAGAUCUAGAUAUCACUAACGGCAAGAAACAUUAAAGAUUUGCCCUUCAAAUCACUGAUGAGACUAGAUAUAUCACUGUUUCAACAUUUAAAGAUCGACAGGGUUUCACAAGAGAGUAAAUAAAUAUUGUGUCGUUAGCCGCU
Sequence
(OSA-LNCN6264.2):
ACCAUAACUCUCAGGGAAAAAAAAGCAUUCACCAACCUACCACUUAUUCAUAUCAGUUAUAAAUAACUAAACACCUGCCUUUCAUUUUUAUCAGUGCCACUUCGUUGUUUUCUUCCUUUCUACAGUUACAAGAACUAAACUUGAAGCAGUUGCCACACAUCAGUUAAAGAGCGAGGAGUAAUCUCUACCACAAAAUGCAUGGGUAUGCAACUGUGAGCUUAAUUCAUUGGUUCACACCCUCAUUUAUCUGAUCUGUUGUAGGGAUGGGAUGCAUUGAGGAAGAUAAGAAAAGGCACAACGAUAAUACCGGGAGUGUUUCAGCAUCGAUCGGUCCUGAUUCCUGACCUUCUUUCAGCAUGAAGUGCGACACUUGCAUCUCACACUAGGACAGAUGUCAUGACCUCAGACCAUGACGGAAUAACUACAGCCGGGAAGAUAGCCGGGCAGCGUCGGCUCCUGGAGAAGGGAUGUAGAUUCAGGCUAAGGAGAAGAACAUUGCUGGGAGAGAGAGAUUAGAUUAAUUGAUAUUCAUUGCUUAAUUGAUAAUAGAUACAAUCCCAUCCUUAUAUAGAUGGUACAAACUUGAUCCCUAAGUAAGAACUUAAUCUUAUCCUAUCUUAUCUCUAACUACUAACUAACUAAUAAUCUUAUCUCUAACUUGAUUGGUUUGGGCUGCCUAUAAACCUUGACCUACGGCCCAAUGCCCAUAACAUUGUGUGAGGUUCAACUCAUGAGCUCGUCAACCAAAGAGGUAGCUAACAUAGCUCACUCUAGGUUAAUGAGAAAGACGAAUUUGGAGCAGCAUAUGUUUCUUUUCCGGUUUCUUUGCAUGGGAAAUGUGAAAGAAGGUUCUGGCUGAUUUUUUUUUAUUGGCAAUGACACAACUGUUCAAAUCACUGAUGAGAUCUAGAUAUCACUAACGGCAAGAAACAUUAAAGAUUUGCCCUUCAAAUCACUGAUGAGACUAGAUAUAUCACUGUUUCAACAUUUAAAGAUCGACAGGGUUUCACAAGAGAGUAAAUAAAUAUUGUGUCGUUAGCCGCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.12%
ME_num:
MEP:
4.27%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.94
Avg Expression:
1.66
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 4.79116309005328 | 0.00458393629433605 |