Chr:
Chr7
Start:
5115491
End:
5116522
Strand:
+
Ref_name:
OSA-LNCN6256
Sequence
(OSA-LNCN6256.1):
CGCUGACCUGGCAAACCUGCUCAUAAUACCCUAAUUUCUAUAUCUUGGGGUAUUGUCACCACCACCACCACCCCUCUAUGAGCAUCUCAUAGAGUGGUGCAAGUGAGGAAAGCCCCCCCUCAAAUGUGAGGCUUCUUCUCUCUUGUCUCAGCACAUUAUAUUGUUGUGGAGGCAGUGGUAUGUGUUUCUUGCUUCUGGUUUUCUUCUCAGCUUCUUUCUUCCUUGAGCUGCUGGCUCUGAUGUGCUUUUGAAGGGCCUAGCUAAUGAAGAGGCAUGGUAGAAAUCAAAGGAGGUGAGGCCAUGCUUGCUUUUGUCCUUUGCUUUUUGAGUUAUGUUGUUUUCCUUCUUUUGUUUCAUUUUUCUUUCUCUUAGAUCUUGAUUGGUAAAAAGAGCCAAUUGGAGUUUUAAGAUGGCAAACCGAAAAUGCUGUCUGAUGGACCAUCAGGGAUUACUUAGUUACCCUUGGAGCAAAACCAAGUUAGAGGAUAAUUUAGUUUACACAAAAGUGUUUAAGGUAAAGUUUGAGUAAAUCUAGGAGGAGGCAUGACACAUGAGAGAUUGCUCUGGUAAAGCAAGGUCCAAAAGCAGAUCCUUCAAAGUGUGAAGCACCCUGAAGAAAUACACACAUCUACCACUUUCAGGAGAUAAAGACCAUAGAACUUCUAUAUUGUGGAAAGGGCCAAAGGAGUUUGUUAUUUUUGAGACAGCCUGACACACUGCUGUACUGAAAUCCACUGUUAUGCAAGCCAACAAAAUUAAAGUGGAACAGGCAGUAGCA
Sequence
(OSA-LNCN6256.2):
UAAUUUCUAUAUCUUGGGGUAUUGUCACCACCACCACCACCCCUCUAUGAGCAUCUCAUAGAGUGGUGCAAGUGAGGAAAGCCCCCCCUCAAAUGUGAGGCUUCUUCUCUCUUGUCUCAGCACAUUAUAUUGUUGUGGAGGCAGUGGUAUGUGUUUCUUGCUUCUGGUUUUCUUCUCAGCUUCUUUCUUCCUUGAGCUGCUGGCUCUGAUGUGCUUUUGAAGGGCCUAGCUAAUGAAGAGGCAUGGUAGAAAUCAAAGGAGAUCUUGAUUGGUAAAAAGAGCCAAUUGGAGUUUUAAGAUGGCAAACCGAAAAUGCUGUCUGAUGGACCAUCAGGGAUUACUUAGUUACCCUUGGAGCAAAACCAAGUUAGAGGAUAAUUUAGUUUACACAAAAGUGUUUAAGGUAAAGUUUGAGUAAAUCUAGGAGGAGGCAUGACACAUGAGAGAUUGCUCUGGUAAAGCAAGGUCCAAAAGCAGAUCCUUCAAAGUGUGAAGCACCCUGAAGAAAUACACACAUCUACCACUUUCAGGAGAUAAAGACCAUAGAACUUCUAUAUUGUGGAAAGGGCCAAAGGAGUUUGUUAUUUUUGAGACAGCCUGACACACUGCUGUACUGAAAUCCACUGUUAUGCAAGCCAACAAAAUUAAAGUGGAACAGGCAGUAGCA
Sequence
(OSA-LNCN6256.3):
UUUCUAUAUCUUGGGGUAUUGUCACCACCACCACCACCCCUCUAUGAGCAUCUCAUAGAGUGGUGCAAGUGAGGAAAGCCCCCCCUCAAAUGUGAGGCUUCUUCUCUCUUGUCUCAGCACAUUAUAUUGUUGUGGAGGCAGUGGUAUGUGUUUCUUGCUUCUGGUUUUCUUCUCAGCUUCUUUCUUCCUUGAGCUGCUGGCUCUGAUGUGCUUUUGAAGGGCCUAGCUAAUGAAGAGGCAUGGUAGAAAUCAAAGGAGGUGAGGCCAUGCUUGCUUUUGUCCUUUGCUUUUUGAGUUAUGUUGUUUUCCUUCUUUUGUUUCAUUUUUCUUUCUCUUAGAUCUUGAUUGGUAAAAAGAGCCAAUUGGAGUUUUAAGAUGGCAAACCGAAAAUGCUGUCUGAUGGACCAUCAGGGAUUACUUAGUUACCCUUGGAGCAAAACCAAGUUAGAGGAUAAUUUAGUUUACACAAAAGUGUUUAAGGUAAAGUUUGAGUAAAUCUAGGAGGAGGCAUGACACAUGAGAGAUUGCUCUGGUAAAGCAAGGUCCAAAAGCAGAUCCUUCAAAGUGUGAAGCACCCUGAAGAAAUACACACAUCUACCACUUUCAGUAGAACAAAACUUUUGUUAGGAUCUAAACUUGUUCUCUGUGGAUUAGAAACAUGUUUUGAGGUAGCAACAAACAAAGUUUCCUUGUCUAAAAGCCAGGCUGAUGCAGGAGAUAAAGACCAUAGAACUUCUAUAUUGUGGAAAGGGCCAAAGGAGUUUGUUAUUUUUGAGACAGCCUGACACACUGCUGUACUGAAAUCCACUGUUAUGCAAGCCAACAAAAUUAAAGUGGAACAGGCAGUAGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
9.76%
ME_num:
MEP:
65.04%
HE_num:
HEP:
25.0%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.75
Avg Expression:
12.83
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.97244882310896 | 0.00235827358258199 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.78116273736562 | 0.00279733767316996 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.6262773494948 | 5.17013522225713e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 7.39914996044496 | 2.25427223833636e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.83971492579217 | 4.23520508502865e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.09602052680713 | 0.00176636596660365 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 4.43970812282979 | 0.000403645459577508 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.19036268562721 | 0.000560111420048091 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.047918570977 | 0.015161102496132 |
| 10 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.35319601233374 | 0.0120034284137468 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.57993025634256 | 0.000475157175427265 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -2.43396711276905 | 0.00490487977131635 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.90142772913427 | 0.000746631232480327 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.8842112935656 | 0.00351740515276464 |
| 15 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.52881069624073 | 0.0274397094704819 |
| 16 | 9311 // leaf // control--/--9311 // leaf // salt | 3.00423157272749 | 0.00152216791072248 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.96862472619751 | 0.0010084456240309 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.73019985477915 | 0.00242737663349337 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.48962844696838 | 0.0110443124746063 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.0466068554324 | 1.5460358141015e-06 |
| 21 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.8356353293582 | 0.00657657101797281 |
| 22 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -2.93055030058715 | 2.75978440366504e-11 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.18883383244623 | 0.0006975616894527 |
| 24 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.93070943950313 | 2.46829884499765e-09 |
| 25 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.77780799446535 | 1.18444075714371e-05 |