Chr:
Chr7
Start:
4668664
End:
4688480
Strand:
-
Ref_name:
OSA-LNCN6251
Sequence
(OSA-LNCN6251.1):
CGUCAAUUUAGCAAAUGAAAAAUAUGGUACAUAAUAGACACACCAUCAAAAAUAACAUGAAUACUUGAAUAGCAUCAUAAAAAGUUCAGCAAAAACACAUAUUGAACUAUUCACAUGGCUAUGCUAUGCUGUUGCUGCCAGCCAAGCAAACACACGACACACACACAUGAGUUCAAGCAAUCAAGCCUUCAAGGUUCAACACAUCACAUCCAAGCAAGCAAAAGUCUCCUGUCCGGUUGUGAGGUUGUCCCCUCGCCGGCCCCACACUUGUCCCCUCGCGCAGUCGCGCUCGCGACUCGCCACAGGCAGCCGGACGCCGCGCUUGUGCGCCGCACCCUCACCGGCCGCCGCCGCCCUUGCCGCUCGACCGCGCAGCCAGAAAGGAGAGCCAGAGGGACAGCCGGAGAGAUGGAGGGGAGAGGAGGGGAGAGGGGCAGAGGGCGAUCGGCGACGGCAAGAUCCAGAAGUUCACUGUGCGGCGUGCGCCCUGGCGCCGCCUCUGCCGAUGCAGACUGGAGCGGUGGAGCGGCUGGAGGGGAGAUGCCGAGAUGAGAUGGGGAGCUAGAGGCUAAGGUGAUAGAUAGCUCAUCCAAGGAGAUGCUCUCCAGCCAAUUGCAUUUUUGUAAGUAAAAUAAAAGACAGGUGGCACCAAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
87.8%
ME_num:
MEP:
9.76%
HE_num:
HEP:
2.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.87
Avg Expression:
2.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.77077884921429 | 0.0266633489590135 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.44119614335566 | 0.0432360890412575 |
| 3 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -5.83330299818331 | 0.00500713258231894 |