RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN6249

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

4642415

End:

4646795

Strand:

-

Ref_name:

OSA-LNCN6249

Sequence
(OSA-LNCN6249.1):

GGCGUGGAAUAUAAAUAGAGGCGACAUCGGCCGAUUUUUUCUAAGUACCAUUUCUCCUCUCAUCUCCCGUUCCCACUUCCCCCUCCCCUCCACCUCUCCUCUCCUCUCCCCUGCCGCCGACCGGAGGCGGCUACUGGGUGGUGGCGGCGCACUCCGGCGCGGACGGUGGAAGGGGCGGACGCGGGGUGGCCGGCAGCGGCUCCCCUCCCUCCUUCCCUCCCUCCUAGAUCUGGCCGGAGGGGGGAGGGGGAGGCCGGUGACCGGCGGCGGGGUGCGUCAUGUGCUUGUCGGCCGGCGGCGGCUCCCCUCCCUCCCUCCAAGAUCUGGCCGAGGAGGGAGGGGGAAGGCUGGUGGCCGGCGGCGCGGGGGGGGGGGGGGGGGGAGGGGGGGUUGCGUCUGUGCGGCGGCGACGGCGAGGAGGGUGGAGGCGGUGGCAUCUCCCCUCCCUCCUAGAUUCGGCGGCACGGAGGACGAUCGCGGCGGCAGCUACUGGCGGUGACGAUAGCGGCAGCCAUGCUUGGCUUGGGUAACGAGCAAGUAAAGCACAGCGAGGAGAGGACCAACUGGUGCCGACCAUCUGUGUCCAAGGGGUUGCGAUCGCAUGGACGACGUACCAUACGCCGUUGAAGUCGUCGGAGCCUCGUAGCAAGGGCGAGAGGCGCAGCACCGCCGGGACGGGGUUCAGCAGCGCCGACCGCAGCGCUCCGGCCUCCGGCGCGCCGCGAUGGAUUGAUGCCCGUCGUGUUGGGCAUCUUCGGCGACGACCCUGAGAUGGCGGGUGACGAUGAGCUGGCCAUGGAUCGAGUCAUCGAAACGCGCAGCAGGUGUGUGCGGGUCUAGGGAAGGGAUGCUUUGGCCUUUUUAUAGAAGCAGUACUCUGCUCUCUCUGUG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

416

LEP:

84.55%

ME_num:

75

MEP:

15.24%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.88

Avg Expression:

1.01

Tip: OSA-LNCN6249 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days"2.671823770396040.00365992151909319
2Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl-2.019029737453610.0293258532197911