Chr:
Chr7
Start:
4213336
End:
4214811
Strand:
.
Ref_name:
OSA-LNCN6242
Sequence
(OSA-LNCN6242.1):
AUUGCCAGUUCUCGCUUGCGGGACGAGAGAUUGUUUUAGCCACCUUCCCACUCCUGCCAUUAUCCAUUCGCCCGUUCUCUCUCUCGCCUACGCCUUCCUCUCUUUUUCUUCUCUCACCUGUGCCGUUUCCUCUCCUUUAGCUCUCUGUCUUCUUUUCGUCUCUCCCCAGCUUUUCCUCUCCACCGGAGCCUCUCCCUGGCGGCUCGCCUUGCCACGGCCGACGCCCAGUAGCUAGCGGCCAGCGGAUUCAUCGGCGACGGCAAGGGCGGUGGUACGGAUGCCAGAUCCGGCAGGCUUGAGCUUGAGGGCCUCUGGAUCUGCCCCCCCCCUCCCCGUGCGGCGCCCUCUAGUAGAUCCGUGGUGGCGAUGGCGGUGGGCUGUAGCAUUCCCUCAACGUCGUCAAGUGCACGGGCGACGAUUUUUGCUGAUUUGUGGAUGUUUUUGUCGUUGAUUUUGUGUAUGUUCACGAUUUUGUGAUGACAAUCGAUCAGUGUGGCGAUCUAAUUUUGAUUUGGGGAUUUGGGGCAACGGGUAGCAACUCGAUGCAUCGACUUGAAUCGAGCCGAUUUUUUUUUUUUUGCCUAGCGAGCGCCUCGAAGGUGCUGGUUGCGAAACCAACACCAAUGGCUCGGAGUCAUCUGUGCCGCGUCUGUUGUGUCGGUGCCCCCAUGUGUUUUUCCAACCGGCACCGAUGACACUUUCUGUAGUAGGGCAGGUUAUCCACCCGCCUGCGAAAAUCGAUUUUGACCGCAUGGAAAAAAUCGAUUCCAUAGUAGUGAACUAUACUAUUAGAUAUGGUGCAUCUUUGUGCUGGCAAGGUUGUUUUUCUUAUAGCAAAGCUGUAAUCUUUUCCGAUCCUAAGUAUAAUAAUUCACUCUUUUAUGUAUUUGGCACCUUUCAUCCAUUUGACGCUGAUGGGAGUCAAAGACAGCAAACGAAAUAAAUAAAAGCUGAGCCCUACCCUACCUUCUCUUCUUCCUCUCGGUUCCGGCUUCAUAAUCAUACUCCUCUUCCUCUCUCUAGCCGGCUGCGUGGCGGUGGGUAAUUCCUAUUGAGUAUUCGUGGGUGGGUUUAGUCUCUCUUGUAUGCUAUAGCCUACUUCUCUAUUUUAAAAAAGGGAUAAUUACAUUCUUGCACCUACUUUAAAAAGCAAUUGUGUUGAAUCUAUCAUGAAAAGACAUAUAUGCCCAUGCAAAUUUAUCUUACUUAUCUGAAAACUUUGUGGUUUUGGCCAUGUUUUGGUAUCAAGCUUUUUGGUAGCAUUUUGACAACAAGGGUUUAUAUGAUUUGCAUGAAUUCUGAAAUGCGAACUUUGAGUAUUGGCUUCCAAUGAGCCAAUAAAUCUCCCAAUCACAAUUGGUGAUGCAUUUUUUUCCAAAUUUCACUAGUACUCCUAAUUAAAAAGAAUAUAUCAGAUAUACUAAGGCUGUGUUCGGGAGGAGGGGUUGGGAACCCCUCCUCUCCGGCACGCAAAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
17.07%
ME_num:
MEP:
82.72%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.54
Avg Expression:
2.47
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.69638150144386 | 0.000754748813207996 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.39990835220216 | 0.00559650004506003 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.52520495832665 | 2.93638776109984e-10 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.5685188311886 | 7.1479259213717e-09 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.93246673012963 | 9.37948603778429e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.26481556181092 | 0.0120956958460611 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.17910897195582 | 0.0491105490738091 |
| 8 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.62857413900152 | 0.00256038054674361 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.71835648990323 | 0.000160581745478951 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.76423457993191 | 4.90558680308048e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.30151786421721 | 0.0036001151385968 |