Chr:
Chr7
Start:
4077435
End:
4087589
Strand:
+
Ref_name:
OSA-LNCN6240
Sequence
(OSA-LNCN6240.1):
GGGGGUCAGAGGUUGCGCGUGGCUGUCGACGUGGACGUCCAGGGCACCGUGCGUCGUCGGGGUGGGGUUCCCGCCAAAAAAGGGCUCAGGAAGAAUCCAGAUGGCGUGCGCCAGUAGUCGCGGGAAUCAGUAUUUUUUUUUCUGAUUUGCUAACCGCCUGUCGAUAGAAAUUGUAUCCUCAAAUCUUGCAGAUUUUGGACAACCAGAUGAGCUUUGAGAUUCGUGCUCCAGGUCUUCUCCAACUCCGGCGACCUUCUCUUCUUCUCCGGCACUAGUGACACCCUACGGGUUAGGGUCCCGGAGUGGGGUGGGGGUGGGAGGGGGAGGGAAGGGGAGGAGUUCGCCGGCUUAGAGGGAUGGCCAGGGGAGGCGGUAGCCUGGCGGUGGGUGGCGGGUCGGGCGGGCGGCGAGGCGUCGGAGCCACGGGGAGAGGAAGCCACAGAAGAUAGGAGGCAGUGGAUAAAAGAAAUAAAUUACACUUACGAACAUAUGUAGUUACGAAGGAACAAGCAUGAAUGGAGUGUACUGAGGAGGAGGACAGAGACUAGCAAGAGUGGAGGCUACAGAAGAGAGGAGGCAGUGGAGAGAAGAAAACAAUUGCAUGUAAGCAGUCAGAACUGUCGAAAGUGUACUUAUCUCUUUCUAAUUAUGCAUAUUUUCUCUGUACAAACCUAUUAAUAAUUGAGACGAUGUACACUUCUUUUUAUAUAUCCACCGGAGUUUAAAUUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
7.52%
ME_num:
MEP:
67.89%
HE_num:
HEP:
24.39%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.83
Avg Expression:
22.30
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.07898570863916 | 0.026347395886653 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.27732854928654 | 0.00719356458047779 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.26986470120404 | 0.0264038165901527 |