Chr:
Chr7
Start:
4124483
End:
4125545
Strand:
+
Ref_name:
OSA-LNCN6239
Sequence
(OSA-LNCN6239.1):
AAAACUCUGAAUAUAUUAAAUGAUUGAUCUUUAAAAAAAUUCAAAUUCACAAGCACACCAAUUUUAUCAUUUAUUAUUUUUGAGUGAUAAGUAUAUAUAUAUAUAUAUUCUGAUUAGCAAGUGUGCCAACGACACGCCGAUUUUCUAGUACUGUCUCGUUACGCUAUUUAACAUGAUUUUACGGGAUAGUUUUAGAAUUGAGAUCAAAGGGUUGCGAUUAAAAAUGAACUCGAUAGAGAGGGACUUAAAGUGUACUUAAUCACGGUGAGGCAGAGUGGAAGAGCGCGUUGCAAAGACCAAAACCCCAUCUUUCUUCCCAUGGCCGCCUCCGCCACCGCCACUAUGGCCGCCACCGCCACUGGCGCCGGCGCCGGGCUCCUCAGCCGCUGGACUCUACUCUCCUGUACACGACGAGGGUACGAUCUCCACUCUUCCCGUGAUAAGUCUUAAAAACCCUAAUCCUUAUUUAUUUUUUCCGUGCCCAUCCGCCGCGACGACAACCGGCGCCGCCGCAUCUACGCCACCUGCGUGGUUCGCACGUCUCUUCUACACUUCGCAGACACCCCCUACCAUCCUAGCCACUGCCCGGCGGCUUACUUAUCCGUGAUCUCGGUCGGGAGAUGGACCUGUUGCGGGCUGAUUUCAACGUCCUCAUGAUAGAGUUUCAGCUGAUGAAAUCUAACAUUGAGGUGGACUCCAUUAAGCUCACCGCAAAUGCCCACCAGGAUAGCUUCCUGAUGCUCGCCGCCGGCUAACUGUCUUGAUGACCUUGGCAACUUGUUAUCCGCAGACCAAGAAGGCAGAUAAAGUUUUCAUGAUUUUUCAACCACACUGCCCGCUGAGCAAGAAGGGGAAAGGAGGGGUGAUCAUUUCCCCCGCCAACGUACCAAGAAAACUGCCACCCCCACACCCAUAUCCAAGGAGGUGCUCAAGUCAGCAAAUGAAUAGGUG
Sequence
(OSA-LNCN6239.2):
GAUUGAUCUUUAAAAAAAUUCAAAUUCACAAGCACACCAAUUUUAUCAUUUAUUAUUUUUGAGUGAUAAGUAUAUAUAUAUAUAUAUUCUGAUUAGCAAGUGUGCCAACGACACGCCGAUUUUCUAGUACUGUCUCGUUACGCUAUUUAACAUGAUUUUACGGGAUAGUUUUAGAAUUGAGAUCAAAGGGUUGCGAUUAAAAAUGAACUCGAUAGAGAGGGACUUAAAGUGUACUUAAUCACGGUGAGGCAGAGUGGAAGAGCGCGUUGCAAAGACCAAAACCCCAUCUUUCUUCCCAUGGCCGCCUCCGCCACCGCCACUAUGGCCGCCACCGCCACUGGCGCCGGCGCCGGGCUCCUCAGCCGCUGGACUCUACUCUCCUGUACACGACGAGGGUACGAUCUCCACUCUUCCCGUGAUAAGUCUUAAAAACCCUAAUCCUUAUUUAUUUUUUCCGUGCCCAUCCGCCGCGACGACAACCGGCGCCGCCGCAUCUACGCCACCUGCGUGGUUCGCACGUCUCUUCUACACUUCGCAGACACCCCCUACCAUCCUAGCCACUGCCCGGCGGCUUACUUAUCCGUGAUCUCGGUCGGGAGAUGGACCUGUUGCGGGCUGAUUUCAACGUCCUCAUGAUAGAGUUUCAGCUGAUGAAAUCUAACAUUGAGUGAGCCAUAAAUCUGAGAUUGCAAUUUGGGUGGACUCCAUUAAGCUCACCGCAAAUGCCCACCAGGAUAGCUUCCUGAUGCUCGCCGCCGGCUAACUGUCUUGAUGACCUUGGCAACUUGUUAUCCGCAGACCAAGAAGGCAGAUAAAGUUUUCAUGAUUUUUCAACCACACUGCCCGCUGAGCAAGAAGGGGAAAGGAGGGGUGAUCAUUUCCCCCGCCAACGUACCAAGAAAACUGCCACCCCCACACCCAUAUCCAAGGAGGUGCUCAAGUCAGCAAAUGAAUAGGUG
Sequence
(OSA-LNCN6239.3):
GAUUGAUCUUUAAAAAAAUUCAAAUUCACAAGCACACCAAUUUUAUCAUUUAUUAUUUUUGAGUGAUAAGUAUAUAUAUAUAUAUAUUCUGAUUAGCAAGUGUGCCAACGACACGCCGAUUUUCUAGUACUGUCUCGUUACGCUAUUUAACAUGAUUUUACGGGAUAGUUUUAGAAUUGAGAUCAAAGGGUUGCGAUUAAAAAUGAACUCGAUAGAGAGGGACUUAAAGUGUACUUAAUCACGGUGAGGCAGAGUGGAAGAGCGCGUUGCAAAGACCAAAACCCCAUCUUUCUUCCCAUGGCCGCCUCCGCCACCGCCACUAUGGCCGCCACCGCCACUGGCGCCGGCGCCGGGCUCCUCAGCCGCUGGACUCUACUCUCCUGUACACGACGAGGACACCCCCUACCAUCCUAGCCACUGCCCGGCGGCUUACUUAUCCGUGAUCUCGGUCGGGAGAUGGACCUGUUGCGGGCUGAUUUCAACGUCCUCAUGAUAGAGUUUCAGCUGAUGAAAUCUAACAUUGAGUGAGCCAUAAAUCUGAGAUUGCAAUUUGGUGCAAAAUGUUUUGUGAAUUUGGUGCAAAAUGUUUUGUGCGAAAAUGUUUUCUCAUCGAUGUUUUCCUUUUCGAACUGAUAGGGUGGACUCCAUUAAGCUCACCGCAAAUGCCCACCAGGAUAGCUUCCUGAUGCUCGCCGCCGGCUAACUGUCUUGAUGACCUUGGCAACUUGUUAUCCGCAGACCAAGAAGGCAGAUAAAGUUUUCAUGAUUUUUCAACCACACUGCCCGCUGAGCAAGAAGGGGAAAGGAGGGGUGAUCAUUUCCCCCGCCAACGUACCAAGAAAACUGCCACCCCCACACCCAUAUCCAAGGAGGUGCUCAAGUCAGCAAAUGAAUAGGUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.73%
ME_num:
MEP:
3.05%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.95
Avg Expression:
1.43
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.67433415996681 | 0.0239066032450572 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.77627230582774 | 0.0162099133315437 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.92569772469736 | 0.0138727232296929 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.333329065268 | 0.0424474287933046 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.03843352586631 | 0.0108304598779819 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.73797673856572 | 0.0156172439995172 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.21442213073995 | 0.00834917264001371 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.62618383999957 | 0.0258045715214115 |
9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.35495109241363 | 0.00498659607896627 |