Chr:
Chr7
Start:
3681469
End:
3682803
Strand:
+
Ref_name:
OSA-LNCN6232
Sequence
(OSA-LNCN6232.1):
UGCACAUCCCCUCAGUCUCUAUCCUCCCCACAUCGAUUCCCCUCCCCUCCCGUGCUGAGACAGGAACAUGCGGAGGCAGCGGCGCGCGCUCGCCUCUGGAUCUCGCCCUCUCGGCGUCGCCGGCGCCGCCUGCGCCUGCCAGCCGCCAGGCCACCAUCUCCCCUCCGGCAUCCGGUGUCCGGCGGCUCCAGCUCCUCCUCUCCCUCCAGAGGGCGGCGGCGGCGGCACACAGGGCGGUGGCGGCGGCACACAGGGCGGCGCCGUUGCCGGCCGGCCGCAGCGCCUCAGGGCGCGGCGGGGAGGCGACACGGGUAGCAAGGGCACGGCCGGCGGCGAGGCUGCAGCGCAUCACAGAGUGAGAGGAUUUUAGGUAUCACCGCUGCUAUAUGUACGAAUGAUUUCAUACGAUGGUUGUACGAUCAAACAGAUCCCUCCUUCACAAAGCCCAAGCUCCUGACGUCCUGGCCUGCUAUCUCGUUGGCUUGCAUGCACAUCCAACCAAAGCAAUCUUCUUUUCUAUCAUAUCUUAAGCAAUCUUCUUUCUAAUAUCUUACGGUAUAGUAAUUGUACUUAGCACUUAACAUUGAAUUUAUCAUGUGGCAGGUUAAGCAAAUUACACAUACAAAUAUGUUCCUUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
96.75%
ME_num:
MEP:
1.83%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.98
Avg Expression:
2.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 9.88683431539493 | 4.31143960396006e-09 |
| 2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 9.49147583485692 | 6.06385737365885e-11 |
| 3 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 4.63807087986854 | 0.00603004363393213 |