Chr:
Chr7
Start:
3585334
End:
3585749
Strand:
-
Ref_name:
OSA-LNCN6230
Sequence
(OSA-LNCN6230.1):
CGAAUCUAAAAAAGAGCAAAAGAUGUACAGAAGUUUCAGUCAAAGAAUCUGAAAUUCAACAAAAGUUUCAGAGAUUGUGCCAAGUUGGUGACUCUGAAAUUCAGCAAAAGUUUCAAUGAAUGACUGAAAUUUAGCAAAUGUUCCAGCUAAUGACUGAAAUUCAGCAAACUUUUCAGUUAAUGAAUCUGAAAUUCAGCAAAAGAUUCAGUUAAUGAAUCUGAAAAUUCAGCAAAAGUUUCAGGAGCAAGAUCAUACGCGCAUCGGCGAAGAGCUUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
80.89%
ME_num:
MEP:
15.04%
HE_num:
HEP:
3.86%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.89
Avg Expression:
4.07
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.49650407773319 | 0.00162722617278095 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.9298067634921 | 1.27974350372479e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.85268182415606 | 0.00189879211969017 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.89976561494683 | 0.00066755919978037 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.50180500915107 | 0.00235759762725921 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.32560115654067 | 3.53750796767576e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.95363225927154 | 0.000132146107142332 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.38940326433054 | 0.00271566650030759 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.3609840085903 | 0.000496094756619218 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.28196430533854 | 0.00618450727753248 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.13337268112681 | 0.00157318055337489 |