Chr:
Chr7
Start:
3214482
End:
3215054
Strand:
-
Ref_name:
OSA-LNCN6225
Sequence
(OSA-LNCN6225.1):
AGGCGUAGUAGCAGAGCAGCAAAUGCAAUGCUUUGGUCUUCUUCCAUCAGAGGGGAGGAGAGGGGGGGGGAGGGGGGUCUCGCUUCAUCAGGUGCCCAAUCCUAUCAUGGAUCUGACCAUUCAUGCUACAAGUAGGUACUAUCAGAUAUGGCCGCGUCCGAAAGUUUUCUUCCAUUAUCUCAGAAAAAAGGUACGUGGACCAUAAGAUAACCAGACACCAGUACUCUUUGGAUCGAAACUAAGAUAAUAAAGUAGCAAAAAUGAAUCACUUAAGAGAUUAUCAGCCCUACCUGAACAGUUGCCGACUGCAGCUAGUGAGUGGAAACAUCGUCUCCCUUCAGAUGACAACCUUGACAACACAAGCACAAACGAACGCACAAAGUUUCAGAGAGAGAAAAAACAUGGGUAAAAGGAG
Sequence
(OSA-LNCN6225.2):
AGGCGUAGUAGCAGAGCAGCAAAUGCAAUGCUUUGGUCUUCUUCCAUCAGAGGGGAGGAGAGGGGGGGGGAGGGGGGUCUCGCUUCAUCAGGUGCCCAAUCCUAUCAUGGAUCUGACCAUUCAUAUCUCAAAUACGAAUAGAAUUCGUGCAGGCUACAAGUAGGUACUAUCAGAUAUGGCCGCGUCCGAAAGUUUUCUUCCAUUAUCUCAGAAAAAAGGUACGUGGACCAUAAGAUAACCAGACACCAGUACUCUUUGGAUCGAAACUAAGAUAAUAAAGUAGCAAAAAUGAAUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
82.72%
ME_num:
MEP:
17.07%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.87
Avg Expression:
1.12
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.68774414706517 | 0.0388581753711172 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 5.81483324190602 | 0.034015285227872 |