Chr:
Chr7
Start:
1613124
End:
1617501
Strand:
-
Ref_name:
OSA-LNCN6201
Sequence
(OSA-LNCN6201.1):
CUCAACCGAUCUGCAGUACGGUGUGGUUAUCUCGCAUUCUCGCUAACAUAAACCGCGGCUUGCAUCCAUCCAUCCAUCGAUCGAUCUAUCUUGUUCCUGGAUCAAUCGGUUAAUUAAGAAGGUGAAUAUAUCGAUGAGCUGCACAAGUAGUUCGCCUGAUCGUGAUUAUGGAGGAGGAGGCGAUAAUUACUGUAGGCGUUGCGCAGAUCGGGAUCGGUUUGUGGAUGAACUGAUGAGACGAGAUGCAGGUCGGAAGAGGUUUUGGAGGAUGCUCAAGGUUGUUGCUUCUCUCUAUGGCGUAGCCCUUCUCAUUGGGAUGUGGUUUGAAGGUGAAGCACACCACAACCAUGAUCACCAGUAGCUUAAUUUACCUGUUCUUUUAAUUUUAGAUAAUUGAUUGAAGGUUGAGAGAGCACCCGAGCAUGCAUGAUCUAAUUAAUUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
26.02%
ME_num:
MEP:
55.89%
HE_num:
HEP:
17.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.84
Avg Expression:
10.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.39297901130557 | 2.12952647524516e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.34906484755069 | 2.89482699275478e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.02945573351487 | 0.0023367753491898 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.24398411582005 | 0.0235522269992579 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.108619945897 | 0.000941642776999783 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.8256594277624 | 0.0159183962044176 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.65921553040936 | 0.004870367270759 |