Chr:
Chr7
Start:
1162251
End:
1165277
Strand:
-
Ref_name:
OSA-LNCN6193
Sequence
(OSA-LNCN6193.1):
CCUUUGAAGUAUAUGCAAACCCAACCUUCUGAGUUGAAUUAGUAGGAAGAAACUUGAGGGAACACAGGUGCCUUCUGAGUUGAAUUAGUAGGAAGGAACUUGAGGGAACACAGAUGCACCAGAGAGUACCCAGCUGGCAGCUGCCAGCAGACGAUAACUGGAUUGAAUGAACGGUGAGCAUAAAGGUCCAUGUCCUUGGUGGAGAAAACUCAAGUAAAUCAAAGAUGUGGACGUUAGGUAAGCCUUAUUCUCCAGUUGAUUAUGCCCUCUUUGACUGACCAAUAGUAAAUUUUGUUAUUAAGACUGAAAGACCAAGAACGGCUAUAGAGGGGGGGUGAAUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
8.33%
ME_num:
MEP:
84.35%
HE_num:
HEP:
7.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.79
Avg Expression:
7.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.80890321907981 | 0.000405513179289517 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.5962462232228 | 1.39757543332601e-09 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.20493046545779 | 3.87264282120189e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.40980487961426 | 1.76303280150227e-08 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.50243130969677 | 4.90574421177589e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.91369998036551 | 0.000271192665411477 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.12203926240682 | 9.64610996738073e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 4.56492441360388 | 2.15232985339362e-40 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.27861039268063 | 7.45354503963588e-19 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.51757350084082 | 0.0319763677731688 |
| 11 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.79783900947176 | 0.00723538344492681 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 5.03067252163701 | 8.70239376830995e-50 |
| 13 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.65494184281443 | 7.07675008166758e-07 |
| 14 | 9311 // leaf // control--/--9311 // leaf // salt | -1.27724954742839 | 0.00108751514070059 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.50403465993241 | 0.00264967173243338 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.45917297640479 | 0.00252424215337609 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.29025420613831 | 9.53002432693654e-07 |
| 18 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.643434309185 | 2.51429521591582e-06 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 1.58550073044348 | 0.013860889719679 |