Chr:
Chr7
Start:
596430
End:
599854
Strand:
+
Ref_name:
OSA-LNCN6185
Sequence
(OSA-LNCN6185.1):
GACGACAUAAGCUUUUUUUUUCUUUGUUGAGUCGGAAUUUUUUUUACCUUUUGAGUCGGACUUUUUUUUUCUUUUUUACCUACUAUAUGGAAAUUUCUUAUUAUUUUUAAGUGGAGAUAGAGAUACAGAGAUUAAACCAAAACAUAAAAUUAAAACCGAUUGAAACACGGAUGACGUAUCAAAUACCGGCAAAAACAUCUUCAAUUUUUAUAAUAGUAGAGAUAGAGAUUUGACAAAAGUGUGAGUAAACUAUAACAAAUUCUUUUGACAGCAUCCACCAAAAAAUGCAUAUAUCGAAUCAAAAAGCAUACGUACAUAUAUAUUUUAGAUCAAAAGGCUAUCGCCCAGCUUUACUGAAAGCAUAAGAAGUCUGUGUACAGAAAUAAGGCUGGGGAUUCCAGCUUACAUAUCAAGUUCUUAGCCAACGACACCGGCAACAAAGCUGCUGACUCAGCACAAACAUACCAUACAAAAAGCAAAAGAAUUACCAUAGGAUGACACAUAGGAUAAAAGAGUUUUGAAGGCACUCUCUUCACAGUGCAAGCACCACUAGUGGGACCCACAAAUAUCUUCACCAAAUCCCCAACUGCUUCUCCUCCCUCCUCACUCAUCACGCCACCAAAUCCCCAAAUCCGGCGUCAGCUCAACCCUCCUCCAUCGCCCAUUCCCCCGCCGCCUCCGCCCCUGCCGCUGGCUAUCCCCUCCUCCCUUCGCCGGCUCCUCUUCUCCCUCCGCCGGCGUCGGCCGGCUCUCAUCUUCUCCGGGCCGAGCGGUGGCGUCGUCCUCCGGGCCGAGCGGCGGCGGCGACGUCCUCCGGGCCGAGCGGCGGCGGCGCUAUCCUCCGGACCGUGCAGCGGCGUCGUCCUCAAGGCUGAGCUGCGGCAGCGUCCUCGAAGAAGCGGCGGAGCGACCUGGCCAAGGCGGUGGAGCUCGGCAUCAACGGGCUCGACUCGCGUGGCAGCGGAGCUCGGCGUCGACCUGUCCAAGGCGACGGCCGGGAGAAGGAGGAGGUGGGGGAGUAGAUCUGGCCGGCGGCUCGUUCUCGGCGUUCUCUCCUUGGCGGCCGCGGAGCCCGCUCUCUCCUCGGCGCGCUCGUCCUCGGCGUUCUUGGCGGCGGCUCAAGAACGGGCGGCGCGGUUGUCCUCGGCGUUCUAGGCGGCGGCUCAAGAACGGGCGGCGCGGUCGACGGUGCCGCCUCGCCUCGCCGUCGGCCGAGCGCGCACCGGCGAGCCUUUCCCCUCCCUCUCUGUCCGCCGCCCCACCCCUCUCCCUCCCCUAUUCCAUCCUGCCGCCGCUGCCGCAUCCAUCCAGCCGCCGCCGCCAUUUUUGUUUCAUGGGAGCCGGCGCCACAGUGCAAGGGAGAGGGCACGGGGCGGCGAAGGCACGCUGCCCACAGUGCGCAUGCCUCGCGAUUUCAGCGUCGCCCUUGACGAAGUUUCACGUCGCUAUGUUUGGUCACGAGUUUCUCUGUUUGGUCCCGGGUCUUAGCGCCACGUCGACGAAAAUCCUACAUAGCACAACAAGGUUCUGCUUCACGUCCUCGCACUGUGAAGGGCCUAAGAGCUACCAAGGCUUUUACUAGUUACUGCCCUCUAUCCGGCAGAUCAGCUGCUUCUUCCUACUUCUUGGAUGCUGGCAUGCAGUGAGACCCUCAAAGCCUCCAGCUCUCCCCUCAGCUUCAAUGGAACCAGGUUUUUCCACUGUAAGAAAAAUGACAAUGCUUUAUAAGGCACAUACGUACAUAUAUAUAGUACAAGCUUACCAAGUAAAUUAUAAUGUUCGCAUCUAUUUUUUAUGUAUCUUUAACGAUGAUACAACAGUGAUAUUAAACAUACGUAAUGGCCACGCUACUACUGUCUAACAGCAUAACGUCAUGUCAGCCUUCACACAUAAGCACACGCAUACAUACGUCCAACAAGCAAGUACCAGCGAGCAUUCUCCCAAAAGUUUUUCUUCUUAGAGGUGGGGUAAUUGUCACGCCCAGAAAUUCCCGAAUAGAAUUCCAAACAGAAUGUGCAUUAAAAUCCCCGUCCAGGACCGGCCGGGGUACACAAGCGACAAAGUUGACAUAUAGAUCCACGUCUUACAAACAUUAUAAAAGUCUUACAUAAAUGCAGCGGAAAACUUAAAGGAUAACUGGAGCUAAGCCUUGACUUGGACUGCAGCGGGAACACCACUCCACAGGCAUCCUCGACAGCACGGACGAAGCCUACUCCUCGGAGAAACCAUCAUCUGACGCAUACUCAAAUUCUGGGGUUUGGGGAAAAUAGAGCAAGACUGCGUACUACCCACUGUACUCAGUAAGUCAUACCGGAAUAGGGGUAUGAUGCAGGAAAUUAUCAAGGGAUAGCUAUAAUGGUUCAUUUGCAUAAAGCGGACGAUUAUAAACAGAAGUUGAAAGCAGUAAAAUAGUUGUAAUAAUUAAUCAAUAUUAAUCAUCCACUGUCCAACGCUAUACCACGUUGUAACAGGCCCAACCAUCCACCUAUACUAGUCAAUUCCAUUAGACUGGUCUAGGGUGAGUAUAAUCACGGUGAAUCUAGUUGACCGCCCAUAACCGCGGGCACGGCUAUUCGAAUAGUUUUACUCUAAUCAGAGGUGUACAACUGUACCCACAAGACACAGCCCCACGACACGUUUCCGUGCGCCGACAUGCCACCACGACAUACCGGAAAGAGGCCGUGACAGGACCCUUCGCAUAACCCCCUCUAACCAAGCACACCACACCUCAGGUUUCACCCCCACUCCUCGCAAGGCAGCGGGCAAUCCCCUCUCGUGCCUAGGUGAAUCCGGAAGCCGCAUAGGCCGUCGCAGGGUCCAUCCAAACUCCAUCACGCCCACCCUUACCUGGAUGCGUCGGCUAGAGGAAAGCUAUAUUACAAGCCCAGCCGUUGCCCACGCUGGCUUGUGGAAAGUACGAGGAAUUCUUCCAGUGUUUCCCACGAACCGUUCCUUAAUUGCCAUGGGUGCGACCAUCAAAACCAUGCACCCACGGCCCACCAUUUAAUAUUAAUUAAUUAACCAACACCGGAGCGGUGAGCAUUAACCAACAACAAUCCUAGAAUUUGAUAUCUAUGCAUUAAUGUAGUUCCCCAUUGUGUGCUAGUUGAACUAAGCAAAGCUAAGCAUUCCCUAGUCCAAUCUCUAGUCAUGUUAUAUCCCAAGCUAACAAAGGAACAUGUUACCAGAUAGCAUGGCUAUGACAGUAGGUAAACAUCCCAUAGUGAUAUUGUAAAACAAUGUAGUAUUUGAAGGAAAACAAUGGAGCAUUUGCAAUAUAGGAUCAACAUGUUCAAGUGACAAGCAUGACUUGCCUUGCUCUGCAGCUGGAGGAAUUUCGGCGACAAUUUCAAGGUACACCGGAGCGUCGGGAGAGCCGGAAUCUAAGCGACAAACAAAGCAAACAAUACAAACAUGCUAUAAGA
Sequence
(OSA-LNCN6185.2):
CAAAUCCCCAAAUCCGGCGUCAGCUCAACCCUCCUCCAUCGCCCAUUCCCCCGCCGCCUCCGCCCCUGCCGCUGGCUAUCCCCUCCUCCCUUCGCCGGCUCCUCUUCUCCCUCCGCCGGCGUCGGCCGGCUCUCAUCUUCUCCGGGCCGAGCGGUGGCGUCGUCCUCCGGGCCGAGCGGCGGCGGCGACGUCCUCCGGGCCGAGCGGCGGCGGCGCUAUCCUCCGGACCGUGCAGCGGCGUCGUCCUCAAGGCUGAGCUGCGGCAGCGUCCUCGAAGAAGCGGCGGAGCGACCUGGCCAAGGCGGUGGAGCUCGGCAUCAACGGGCUCGACUCGCGUGGCAGCGGAGCUCGGCGUCGACCUGUCCAAGGCGACGGCCGGGAGAAGGAGGAGGUGGGGGAGUAGAUCUGGCCGGCGGCUCGUUCUCGGCGUUCUCUCCUUGGCGGCCGCGGAGCCCGCUCUCUCCUCGGCGCGCUCGUCCUCGGCGUUCUUGGCGGCGGCUCAAGAACGGGCGGCGCGGUUGUCCUCGGCGUUCUAGGCGGCGGCUCAAGAACGGGCGGCGCGGUCGACGGUGCCGCCUCGCCUCGCCGUCGGCCGAGCGCGCACCGGCGAGCCUUUCCCCUCCCUCUCUGUCCGCCGCCCCACCCCUCUCCCUCCCCUAUUCCAUCCUGCCGCCGCUGCCGCAUCCAUCCAGCCGCCGCCGCCAUUUUUGUUUCAUGGGAGCCGGCGCCACAGUGCAAGGGAGAGGGCACGGGGCGGCGAAGGCACGCUGCCCACAGUGCGCAUGCCUCGCGAUUUCAGCGUCGCCCUUGACGAAGUUUCACGUCGCUAUGUUUGGUCACGAGUUUCUCUGUUUGGUCCCGGGUCUUAGCGCCACGUCGACGAAAAUCCUACAUAGCACAACAAGGUUCUGCUUCACGUCCUCGCACUGUGAAGGGCCUAAGAGCUACCAAGGCUUUUACUAGUUACUGCCCUCUAUCCGGCAGAUCAGCUGCUUCUUCCUACUUCUUGGAUGCUGGCAUGCAGUGAGACCCUCAAAGCCUCCAGCUCUCCCCUCAGCUUCAAUGGAACCAGGUUUUUCCACUCGGAAAACUUAAAGGAUAACUGGAGCUAAGCCUUGACUUGGACUGCAGCGGGAACACCACUCCACAGGCAUCCUCGACAGCACGGACGAAGCCUACUCCUCGGAGAAACCAUCAUCUGACGCAUACUCAAAUUCUGGGGUUUGGGGAAAAUAGAGCAAGACUGCGUACUACCCACUGUACUCAGUAAGUCAUACCGGAAUAGGGGUAUGAUGCAGGAAAUUAUCAAGGGAUAGCUAUAAUGGUUCAUUUGCAUAAAGCGGACGAUUAUAAACAGAAGUUGAAAGCAGUAAAAUAGUUGUAAUAAUUAAUCAAUAUUAAUCAUCCACUGUCCAACGCUAUACCACGUUGUAACAGGCCCAACCAUCCACCUAUACUAGUCAAUUCCAUUAGACUGGUCUAGGGUGAGUAUAAUCACGGUGAAUCUAGUUGACCGCCCAUAACCGCGGGCACGGCUAUUCGAAUAGUUUUACUCUAAUCAGAGGUGUACAACUGUACCCACAAGACACAGCCCCACGACACGUUUCCGUGCGCCGACAUGCCACCACGACAUACCGGAAAGAGGCCGUGACAGGACCCUUCGCAUAACCCCCUCUAACCAAGCACACCACACCUCAGGUUUCACCCCCACUCCUCGCAAGGCAGCGGGCAAUCCCCUCUCGUGCCUAGGUGAAUCCGGAAGCCGCAUAGGCCGUCGCAGGGUCCAUCCAAACUCCAUCACGCCCACCCUUACCUGGAUGCGUCGGCUAGAGGAAAGCUAUAUUACAAGCCCAGCCGUUGCCCACGCUGGCUUGUGGAAAGUACGAGGAAUUCUUCCAGUGUUUCCCACGAACCGUUCCUUAAUUGCCAUGGGUGCGACCAUCAAAACCAUGCACCCACGGCCCACCAUUUAAUAUUAAUUAAUUAACCAACACCGGAGCGGUGAGCAUUAACCAACAACAAUCCUAGAAUUUGAUAUCUAUGCAUUAAUGUAGUUCCCCAUUGUGUGCUAGUUGAACUAAGCAAAGCUAAGCAUUCCCUAGUCCAAUCUCUAGUCAUGUUAUAUCCCAAGCUAACAAAGGAACAUGUUACCAGAUAGCAUGGCUAUGACAGUAGGUAAACAUCCCAUAGUGAUAUUGUAAAACAAUGUAGUAUUUGAAGGAAAACAAUGGAGCAUUUGCAAUAUAGGAUCAACAUGUUCAAGUGACAAGCAUGACUUGCCUUGCUCUGCAGCUGGAGGAAUUUCGGCGACAAUUUCAAGGUACACCGGAGCGUCGGGAGAGCCGGAAUCUAAGCGACAAACAAAGCAAACAAUACAAACAUGCUAUAAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
11.59%
ME_num:
MEP:
76.42%
HE_num:
HEP:
11.79%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.71
Avg Expression:
6.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.09437472012179 | 0.00968278998886432 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -8.18129114953468 | 4.73805063284826e-08 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | 1.10994474188142 | 0.00244928588998705 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 1.8032557690296 | 0.00656115414769852 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.25239161073747 | 0.00201850213304898 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.37806856817574 | 0.00364960994462451 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.3953562235801 | 0.00316912301584201 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.199327944545 | 0.00281303642833298 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.35639362234603 | 5.77255973238693e-05 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 1.11386658426908 | 0.00741563167657131 |
| 11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 2.52150295599221 | 4.02752613650252e-17 |
| 12 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 2.16983267590892 | 2.01035461360199e-14 |
| 13 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.77710482966331 | 4.40264518202217e-10 |
| 14 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -4.7653615390798 | 5.78579604134106e-06 |
| 15 | 9311 // leaf // control--/--9311 // leaf // salt | -1.10051602046773 | 0.0179468772945317 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.77980527048987 | 3.23351789380244e-05 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.01887010999629 | 0.0096381099560464 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.18948493913197 | 0.00774306237951136 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.39933569965103 | 0.0001235634704007 |