Chr:
Chr7
Start:
53934
End:
55432
Strand:
+
Ref_name:
OSA-LNCN6178
Sequence
(OSA-LNCN6178.1):
AAUAGAGGUAGUAAUUAUAUAUGCUCCACCUCUCGUAUCCAAUAUUUGUUUGAUUUUCGAUAAUAAAGCAGGGGCAAUCAAUCCGUUUCGAAUCGAUUCUAGAGGAAUUUUACUUCUUUUUGGGAGGGAAAAGGAGAGGACAGGAGGGAAAGAAAGCAGCAGCAGCAGCAGAGCACCUACUAGGACUAAACAAUAGUGGAGUGGAGUAUAUGCUGAAUUCCGUUGAGGCUUGGGUUUGGGCUUUGCUUGUUGAUUGGAGUUGCCGAUCGAGGCGGUUGCUACCAAGAAGAAGAAAUACUCCACAUAUAUAUAACGUGCACGCUAACAUUAACUUUGUUGGGGAUACAGGCCCAGCCAAAACUCAGCAGAGGUUUCCAUCUCCAUAACACUAAUAAAACUCAGCUGUCUGUCUGUGUCUGUUAACAUAACUCCAGUUUCUCCUUUCACAGUCACAGAAUCAUCCAUGAGCAGAAAGAGGAAAUGAUUGGCACCAGACCAGAGCAUCAUUAAAAAAAUAAUAAUUUAACAUCAUAAAAAAAACAACAAAAAAAUAUUUCGUUCCAUAACGGAAAAGGGUCGUUUCCUUCUGGAUGAGCAACUUGCGAAGGAUGCCAAAGGCUUACCAUGCUGUGCUUGAUUCACUCAAGUUCACGUGCCCCCCAACAACGGCAACAACAUAUGGUUUUUUCUAAGCAAGUUUUUACCACAAAAACCCAUUUCUCCCUAGUAAACAGUAAUAAUAUCUGGGAACAUCAUGCAGGCGGAGGUUGAAACUUCUAACACCACACGGAUCUUGAAUGAUUGUGCAGAGAGAUGAUUAUGCAUUGCAUAUGUCCAGGUAAAACACACUGCUGGAUUCCUAUUUCUCCCCUGCAAAAGAAAAUUUGGAUUCCUAUUUUUGCCAUAAUUGACAGAUUUUACCAAUCCAGCAGAGCACGAUAGAUGGUUCUUCUGAUAUACUGUACAUAAAUACUGAAGGGCAAGGUGCUUCAACCAUUGUUGUUUGCGAUGAAAUCGGAAGCUUCAGAUUAGAACAAUCAAAACGGUACAAGAUCCUAAGCACACUAACGCACAAAGGCAGCCAGGCAUAUGCUUGCAGAGAUGUUUUCAGAUUAGAAUGACAAGAAUGCUUCAAAUUCUUCAAUGCCCUAUCAGCGGAGGCAUGCAGGAAUAUAGUUGCAGAGACCGAAUUCAGUUGACGGUUGACUGGGUUCGAUCGAAGUAGUCGCCGAAACAGGAAAAAAGGCUUACAAUACAAAAUCAGAGAGAAAAUGCCAGUCAGCCCCUAGGAGGAAACAAGACAACUUUCUUCGACACAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
69.92%
ME_num:
MEP:
29.67%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.71
Avg Expression:
1.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.57629252178888 | 0.0323006742883095 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.10879893475575 | 0.00441522794486082 |