Chr:
Chr6
Start:
30997618
End:
30998043
Strand:
-
Ref_name:
OSA-LNCN6172
Sequence
(OSA-LNCN6172.1):
CAUAUAUGAUCAGUUAAGAAUAAAAUCUACAUACAUGCAAUUUCUAAUCCCUUAACUAUGUGGAUUAAUUCCCUACAUACUUAUCUUACCUCACCAAAGAAUAUUGACAUUAUUUUGCUUCGACAAUAGACAUGUUUCUUUUAGAAGGCGUUUGAAUUUAGUGAGCAUGCAAGUUUCACGGACAAGACAGGAAGAGUCCCCACAUGUAGGUGAUAGAGCUGGUGGUGGCAGAUUCACUGUCACCACCAGCUCUAAAGUACUACUACCUUCUAAAGUAGUAUAGAUACAAGCGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
97.36%
ME_num:
MEP:
2.24%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.93
Avg Expression:
0.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.02668603846468 | 0.000969900953774761 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.1290026963016 | 0.000566097859588382 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.23880822773378 | 2.3966741929443e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.27140148442817 | 0.00819181717805559 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.48200274209789 | 0.000440380503078732 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.68885597381654 | 0.00241639051225583 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -2.12134814662366 | 0.0427869922980525 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -3.65847083462338 | 0.0048414934935549 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -6.35028512181458 | 1.47982677068228e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -4.99377759874952 | 0.00140633156914202 |
| 11 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.75488955208484 | 0.0295204682859315 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 7.14339766342546 | 0.000500203480499716 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.05234822960576 | 3.43623921188692e-05 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -6.5302622867398 | 6.90025320853745e-06 |
| 15 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 6.66559975801293 | 0.00164393146813984 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.9421670766165 | 9.75019734456952e-05 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.67077154070969 | 2.58182106512263e-06 |