Chr:
Chr6
Start:
30497374
End:
30497764
Strand:
+
Ref_name:
OSA-LNCN6167
Sequence
(OSA-LNCN6167.1):
CUUCGAUGCCGGCAAGCCAAGAGGAAUAAAUAAUCUCCCCGCAAAAAGAAGAAGAAGAGGAAUACAUAAUCACGCGCUCGAGCAGUGGAGGGCGCCGAUUAGUCUGCCAUUUGUCCAUAUCGAUCGUAGUACAAGGCAAGAACUAGGACGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCGGAAACCGAGCUCUUUUCCCAUCCCUGAGAAGGCACCAUGAGGUACAAUGAGAUACUAUGAGGUACUAGGUACUAUGAGGUACCAAAUCAAAUCUAGCCAUUGAUUUAGGAGGGGCACGAUCGGAAAAAAGGAGGCAUUCGCUCGUUGGGCCACUCGGUCGGCACCGCCAAAGCAGGCGAAACAAUCCCUUCAAGUCCAGCACGAGUCGUCGUCCGCCGUAGCAGUUCCGCCGGCGCCCGACCACAGCCGCCCACCGCCCGACCAUAGCCGGCCGAGCACAGGUGCCCACCGCCGUUGCCCGCCGCCCGAGCACCUUUCUUUCCGUCACCGCCAGCCAUCCCGGACAGAGCAGCGCCGCUAGCCAUCCUUCUUAUGGAUUAGGGGUUGAUUUUGUCCAGCUUCUUGUUAUUUGCAGACCUGUUCCAAACCUGUAUUGCACCAGAAGUACUGCAUUUUGUAUUUGCAAACUUUCUUAUGGAUUAGGGGUUGAUUUUGCCCAGCUUGUUGUUAAACUGCAUCGGUAUUGAAUGCAAAGCUCACAUGUUGUGUGCCUGGAUUUGUACUUGUGUUUAAAUCUGGCUGUUUCAGUUAAAUUGCAUCUAUUAAUCAGUGAAUGCAAAGCUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.07%
ME_num:
MEP:
39.84%
HE_num:
HEP:
5.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.88
Avg Expression:
4.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.26985548268767 | 0.00971181247111204 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.04109479869587 | 0.0115230328572344 |