Chr:
Chr6
Start:
30385836
End:
30386549
Strand:
+
Ref_name:
OSA-LNCN6164
Sequence
(OSA-LNCN6164.1):
AGCAGGUAAGAUGAAAUGGGAGGGCAAUUACCCACAAAGAGUCAUCAGAGUAAGUAAAAAAAAAGAAAAAGAAAAAGAAUCCAUGUUUAGAUUGGCAACGGAGAUGAAACAGUAAAAAAAAACAUUUGCUUUUACAUUGCCAAAAUGCCAACCAUGGUAAUUGAACGCAGGGGGAUAAAUAGGGAGCACGGCAUCUGAAAGUCAAGAUAUCUGGGUUCAAAUUUUAGAGAUCCGACCCAAAAGCAUUUGAAUUGACAAGGUCUUCCAAGACGAAACAGCAAGAGUUUCCGUUUGCAUCUAGAAGACAGCGACAAUGGCGACGACCGCGAUGCUGAUUUGCACGCACGAGCAGGCUUACGACUUGGACUAACCAACCGCAGCCUCGUCAAGAUCUAGAAGCGGAGCAACAGCAGCCGCCACCCAAUCGCGGCGGCGCAGGUGUUGCUGCAUACGAAUCAAGAUCCACCAAAGUGUUCGAUUAUUCCCCAGAGAAGGGAUUGAGAUGCGGGCGUCGUCAAACUAAGCGAGAUGCCGUGCGACCAAUUGAGCUAGGCGGCGACCAAUCCCAAGAAGCAAACAACGGUUGACCUGAGAAUGAGGCAGCAAAGCAAAGAGAGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
67.28%
ME_num:
MEP:
31.1%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.86
Avg Expression:
2.47
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.56661865121635 | 0.000206659548166691 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.65737824299377 | 0.00402524495497855 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.24536696992536 | 3.19571181276854e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.83019377742112 | 0.000165327375435305 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.78767911269776 | 9.29451731009999e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.14228565059 | 0.0012757763820831 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.65306568580759 | 5.83559499477274e-05 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.45987716650632 | 0.0043595791186471 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.52158865309741 | 6.55131601241278e-07 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.56530704952663 | 9.07085193570394e-05 |
| 11 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 2.71811350720751 | 0.048869395653757 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.39378858837342 | 0.000328779941111836 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.52815957834538 | 5.19605039310323e-05 |