Chr:
Chr6
Start:
30348865
End:
30349259
Strand:
+
Ref_name:
OSA-LNCN6163
Sequence
(OSA-LNCN6163.1):
AGCAUACCAAAAUGUGUGAAUCCGAAAAAUAUAUAUUUAAGUGCAUGCCGUCUUUCUGAAUCUUCUGUGAAGAUUGUACGCUACGAGUCUUGAAUGUAGUCUAGAGAAAGUAAAAGCGAAGUUCUUUUUUGAAACUCUGAAAAAACAUGCAGCCAUGUGGUCAGUGCCCAAGCUGAAAAGACAAAAUCUUCAAGUUCUUCUUUUGCCAUUCAAUCGUCCUGAUGAACAAAUUCGGCUGCGCUGGUUGAGGCGCUUGACGGCGAGGACGACCCGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
47.76%
ME_num:
MEP:
45.12%
HE_num:
HEP:
6.91%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.88
Avg Expression:
7.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.19300456077252 | 0.000305077619852787 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.27984818843904 | 2.92724380145825e-05 |
3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 2.89781294857591 | 0.0445339815753133 |
4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.27033649449696 | 0.00963743901316645 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.94925341893104 | 0.000849823363305404 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.25057007384018 | 1.19587760641254e-12 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.1487928986815 | 0.0487366811193447 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.43187742821989 | 0.00871674231034456 |