OSA-LNCN6163


Function Link


Basic Info

Chr:

Chr6

Start:

30348865

End:

30349259

Strand:

+

Ref_name:

OSA-LNCN6163

Sequence
(OSA-LNCN6163.1):

AGCAUACCAAAAUGUGUGAAUCCGAAAAAUAUAUAUUUAAGUGCAUGCCGUCUUUCUGAAUCUUCUGUGAAGAUUGUACGCUACGAGUCUUGAAUGUAGUCUAGAGAAAGUAAAAGCGAAGUUCUUUUUUGAAACUCUGAAAAAACAUGCAGCCAUGUGGUCAGUGCCCAAGCUGAAAAGACAAAAUCUUCAAGUUCUUCUUUUGCCAUUCAAUCGUCCUGAUGAACAAAUUCGGCUGCGCUGGUUGAGGCGCUUGACGGCGAGGACGACCCGG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

235

LEP:

47.76%

ME_num:

222

MEP:

45.12%

HE_num:

34

HEP:

6.91%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.88

Avg Expression:

7.23

Tip: OSA-LNCN6163 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA2.193004560772520.000305077619852787
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA2.279848188439042.92724380145825e-05
3IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h2.897812948575910.0445339815753133
4Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated2.270336494496960.00963743901316645
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.949253418931040.000849823363305404
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA3.250570073840181.19587760641254e-12
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.14879289868150.0487366811193447
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA1.431877428219890.00871674231034456