Chr:
Chr6
Start:
30343929
End:
30344559
Strand:
+
Ref_name:
OSA-LNCN6162
Sequence
(OSA-LNCN6162.1):
CCAAAGGCCAAGUUCCAAAGCAGGAAUUUCUAUAAGGCAGCUGUAGCUCACUAGAAAGACUAAAAGGUCCUUUUAACAUGGGCCAUGGGAACAUAGUAUAUAUUCCUGUAAGGCUGUAACCUACUAGUUGAUAAGCCGCUAACCAUGCCGGUUUGAUCUGCACUCAAUGGUCCAAAUCAUAACAGUGGCAACUUAUAUCUCUAAAGGCUUUAGCAUGUGGGCUGUGGCAAUUACAACAUACAAGUCCAACUGGCAAGCUCAAGCAAGCACAUAGGAAAACACUUCAGCAAGAAAGAUGACAAAAGGUACACAGAGCAUGAAUCAGAACAAAAUUCCCAAGCUCCACUAGCUACACAAGAAACUGAGUAAGAUCAAAUUAUUGUCCUGAAGACAAGAUCUGUAUUUAAAAGGGUACAGCCCAUAGAACAGAAAAAAGAUUGCAGGCAGCCAUGGACAGAUGGAUUCUAGGUUGUUUAGCAGAGUUUAAGGUUGAGGUGGAAUUACUUCGAUGCCUCUAGGAGUUUACUUGAUUGGGAAAGAUCACGCCUAAGGAUGAAACUACUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.5%
ME_num:
MEP:
41.87%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.86
Avg Expression:
3.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.57049976597002 | 0.0156657043911677 |