Chr:
Chr6
Start:
29886420
End:
29888363
Strand:
+
Ref_name:
OSA-LNCN6150
Sequence
(OSA-LNCN6150.1):
CUCGCAACGGCGCAACCACUCACUACAAGCACAAGCAGCAGCAGCUGCUGCACAGUGCAAACGGCAAAGCAGAGCAGGCAGCUACAGCUACAGGGGUGGGGACGAGUAGACAAAGCAGUGGCCCAGCUAGCGCACCAGUGCACCACCAACAACAACCCGAUCGCCGAUCGCUCGCCGUCGAUUGGCCGAGGCAGAUAAGAUCGCUUAUUCACAGAUGUACUGCAGUGAUAAAGGGUGUAUGGUUUCAAGGCUGAGGGAUUCAGAAAAAGAACUGAGAGAGACAGCGGAGCUUACUGUCGUCGUUGCUACGAUGAAAAGGGUUGCUUUCAAGUGUCCAUCUCUGUGGCAGAGCUGGCUACAGAAUGGGCCUUGCUUGAUGAAUUGAAGCAAAAGCAACAUUGCUAGCGACUUGGAGGAAUUGGGAAUAUAAGAUGUUGCUCGAUCAGACAGCCAUGAACUCCCAGCACCAAUGCCCUGGGCAGCAUGUGUUUUGUGGGGGCUAUCUCGUACAAAUUGGCCAGCGAUCCAGCGUACCAAACCGAUUUGUCGUGGGAUUAACAAUCAGUCGAUCACAAGGCUACAAAAAACGGAGUUAAUCAAAUCGAAGACUGCGUCUGCGUUGGUCGUUUCAUAAUCACGUUCGACAACUUUCCAUGUGUGAAUAAACAAAGUCAAUCAUAAGGGGAAAGCACCUUUAUCAUAAAGGUUAAAAAAUCAU
Sequence
(OSA-LNCN6150.2):
CCGUCGAUUGGCCGAGGCAGAUAAGAUCGCUUAUUCACAGAUGUACUGCAGUGAUAAAGGGUGUAUGGUUUCAAGGCUGAGGGAUUCAGAAAAAGAACUGAGAGAGACAGCGGAGCUUACUGUCGUCGUUGCUACGAUGAAAAGGGUUGCUUUCAAGUGUCCAUCUCUGUGGCAGAAUGGGCCUUGCUUGAUGAAUUGAAGCAAAAGCAACAUUGCUAGCGACUUGGAGGAAUUGGGAAUAUAAGAUGUUGCUCGAUCAGACAGCCAUGAACUCCCAGCACCAAUGCCCUGGGCAGCAUGUGUUUUGUGGGGGCUAUCUCGUACAAAUUGGCCAGCGAUCCAGCGUACCAAACCGAUUUGUCGUGGGAUUAACAAUCAGUCGAUCACAAGGCUACAAAAAACGGAGUUAAUCAAAUCGAAGACUGCGUCUGCGUUGGUCGUUUCAUAAUCACGUUCGACAACUUUCCAUGUGUGAAUAAACAAAGUCAAUCAUAAGGGGAAAGCACCUUUAUCAUAAAGGUUAAAAAAUCAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
42.89%
ME_num:
MEP:
56.71%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.66
Avg Expression:
1.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.70817643274115 | 0.0297752798542409 |
2 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.88513628660658 | 0.0285906242058839 |