Chr:
Chr6
Start:
29580139
End:
29581226
Strand:
-
Ref_name:
OSA-LNCN6147
Sequence
(OSA-LNCN6147.1):
AAACACUCACCCCCUUAGCUUCCCAACCUCCUAAUCAUACGAGUUUGGUUGCCAUUUGACACCACCACGUAUAGGAAUUGAAGUGAUCGAGAAAAGCUGAGACCACGUCGUCGUCGUCGUGGUGGUUGUGCUUCUCCACCACCACCAAUCCGAAAGAUCCAAAGAAUCAAAUUAAGAGCUUAGCUAGCGAUCUCGAUCGAUCGAUCGAGCAGCCGCCAUGGCCGCCACCAACUCAUGAUACGACCAGAAUCGCCGCCGAUCGACGACGACCAAGAAACGUAGUGCGGUGUGGUGUUUGAUCUUGCUGCGGCCUCGCCGGCCGGCGGCGAUGAUGGUGAUGGGCUACUUGCUGGCGCCCAAGAAGGGCGGGAGGAGGAGGAGGGGGAAGGAUCAGCCGCCGACGAGUUCGGCUUCGCCCAGGCCGGCGGCCUCCGCGUGCCCUGCGGCGAGGACGACUUCGAGGAUCUCCUCCGCCGCCUCCGCCGCAAGAACGGCGGCGCCGCCGCCGCCAAGGCUAAGAAAGCCAUCAGCUAGCCACGCGUACGUAUACGGUAUAUAUACCGUAUAUAUAUAUACACGUACGUAUUUACACUAAUUUUAUGGAUUAUAUAGUACCUAAAAUACUGGAUUGCUUCAGGUGCAAGUGCAAAAUAUAAUGUAGAGACGAGAGAAAAAAAAUUCAGAAUUAGCAUGAAUAUGCAUGGGUAGCUAGCAUAGUUGCAUCAUGCUGCAAGCAGAUGCAUGGCGUGUUCUUGGUGACUUUUGCUUUCAAUCCAUGGAUUUCUGGAGAAGCAAUUGGCUUAGACAGUAGCUUUGAUGUGCAUGCAAGUUAAUCUAUGGAGUAGUACAUUUGACAGAGUGAUUAAUUAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
85.57%
ME_num:
MEP:
10.57%
HE_num:
HEP:
3.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.86
Avg Expression:
2.65
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.20313569571835 | 0.0287078329752559 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.57283397730025 | 0.00804932205132359 |
| 3 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 2.14048131220996 | 0.00123070059886005 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.19946886851691 | 7.21078305119488e-05 |