Chr:
Chr6
Start:
29537430
End:
29543298
Strand:
-
Ref_name:
OSA-LNCN6146
Sequence
(OSA-LNCN6146.1):
AAAGGAAUAAGUUCACCGGCCGUCCCUCAACUUUACACUGAGUUUGUUUGAGAUCCCCUAACCGCAAUAUAAAAAUGUGUACCUCUAAACUAUGUAAAACCGUUCAAAUAAAAGUCCCGAGGCAGUAUAACCGUCUGGUUUCACUGACGUGGCAUCCUAGUCAGUAAUAAAUAAAUAAAUAAAUAAAUAAAUAAAUAAAUAAAUAAAUAAAUAUGUGGGCCUACAUGUAAGUGAGAGAAAAUGGAGUGAUCCCCACAUUUAUCCUUUCUUUUCUUUUUCUCCUCUUCUCUCCUGAUUCUCUCGAGCAGGCGCACUGGCAGAGGAGAGAGAGGUGUCCGACGGCGGAGUGGGGACAGCGGGAGAGGGGGAGAGAGGUGGCUGACGGCGGAGUGGGGGCGGCGGGAGAGGGGGUAGAAAUGCGGUCAGCACGACGGCGACGGCUGGAGAGGAGGAGAGGUGGUGGCCGGCGCGACAGCGAGCUUGGUGGCAGAGAGGAGCAGCGCGCAGCGCACUGGCGAGGGCGGCAGCGGGAGCGGAUGAGCGCCAAACGCGGCCGGCGGCGGAUGUCCCCUCCCUCUCUCUUGCCUGGGCACAACUGUCAUGGUGGCCGGUGGUGGCUGCAGUCGGCGACCGGCAAGGAGGAGGCUCCAACGUCGACGACCGCUACUUCGAGGAGGAGGCGCGAGGAACGGAGAGGAAGGAGAUGGGGAGGCCGGUGAGCAGGGCGGGGAUGCCAACGAGCGCGAGCGAAGAGGGAGGCAGCGAGGAGGUCGGCGAGCUCUCGGAGAGGGAGGAGACGGGAGCCGUGCCACUCCUCUCCCUCGCCGCCUUGCCACGCCGCGCCGCACGCUACUCUUCUCCGCCGACGAGCUCGCCGUCACGCCGACCUCCUCCUCUCUCGCCGCCGCCGUUGCACCGACUGACUCCUCUCCUCCUCUCUCGCCGCUGCCGUCGCGCCGACCACCUCCUCUCCCGCCACCGCCGUUGCACCGGCCACCUCGCGCCGGCCACCUCUCUCCCCCUCCCCUACAGCCCCCGCUCCGUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
53.46%
ME_num:
MEP:
39.02%
HE_num:
HEP:
7.32%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.97
Avg Expression:
27.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.02391842356633 | 0.047103871207816 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.898140672568 | 1.80542406483545e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 10.6836917024201 | 1.18857694468787e-26 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.61937086522307 | 2.18683444795637e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 8.7821509771923 | 2.06162728374148e-18 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -4.5639214910401 | 0.0264057043187662 |
| 7 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -3.33692906551717 | 0.0267450458662247 |
| 8 | 9311 // leaf // control--/--9311 // leaf // salt | 2.50633799487679 | 0.00848564140351722 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 8.51376947810937 | 9.098541632012e-18 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.88810385252907 | 8.74039674968379e-06 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.55737720846697 | 0.000230786553590966 |
| 12 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.02314784012353 | 2.79879012219389e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 6.4281449946732 | 2.97899402322126e-10 |