Chr:
Chr6
Start:
29150890
End:
29152097
Strand:
.
Ref_name:
OSA-LNCN6134
Sequence
(OSA-LNCN6134.1):
CAAUGAUAAAAUUUUCCAGCUGUGAACUUUUGAGUUGAGCGAUCGGACAGGAUUGUUCAUGCACAAGCACAAUGGAUAAUGAUUGGGUUCCUUGAUAUUUCGAGUGGUGAUUGGGGUUACUAGCGGCAGAGCAGAAAACAAUGCAGGAUUUCAGGCAACAUCAAAGCUGGAUCAGUUGCACAAAAAAGCACAAAGGCACUAACACCCAAACAUUAAACCCUACUACCCGAAAGCAAAGCCUUUUGCCGAGUUCGUAGCCUCUUGAGCGCCGCACCACGGUUUAGCUGGACACAGACAGUGUCCAGAGUUCAGAACAGAGUACACAUUUAAGCUCUCAGCAAGCUACGAUCGAGUUGGAUCCAGCUCGAUGUUCAUAGGCCGAGUUGAAAGUUCAGCAAAUGCAUUCUUGUUGCUCGUCAGUGGCUAUUAAAGCCUCCUUUAAAUUCGGAUGGGUUUCAACUUUCAAGGCCAUGCCUUUCAUCUCUGCGAGAUGAUUGACAUAAUUUGGGUUGUUUCAGGCCAUGUGCCAUCACAUGUGUUCUCCAAGCUUAUAGUUAAACAGAUAGUGUGAUUUAUAGCUUGCAUCUCCAUCACCUUCCAACUAGGAUGAAGUGCAUACAUGAUAGAUCUAGAUAGUAACUGAAACCCAAGUAGUGACAAGCAACUGAAUUAUCUUCUUUCAGAAAAGAAGCAACCGAGUUUUCUCAUACUUGACCAAACUUAAUGAUGUCCAGGACUAUCUAAGGCGUGAUCCAAUCCAAGAGGAGGACUAGUCUUGCACGUAUAGCAGCUGUCCGCAGGAGAGGGACUGGUCCCUCAGUUAUCAGAAAGUCGCUUUAGAAUGCCAUUGAUGCAUCAAAAGUAGUAAUCCCAAUUCCCAAAUGCUAAUUAGGCUAGAUGAUGAUCCUCUAAUAUCUAAUCAUAUGCAGGUUAGGCCAGGGUAGUUGUCUGAACUCAGGUGUGCCAAUUAUGUUGGUGCUGAAAUUGUGCAAUUAAUUUGGAUGAAUGUACUGAAGCUGGAAUUUGCAAUGAGUCCAACUCAGCUACUGUAUCUCUGUUUUAUUUGUAGUGCGAAUUUUAACCUGUGACUCUGUUAGGCAAGUGAAAUCUGGAAAUGUAGCAGCAUAUCUGGAAUGGAUUGCAUGUAAUCUCAUCUUCCACUAGGUUCAGGACCAUCUUGCAAUCAUCAAAUGAUUAAUUAAUUAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.89%
ME_num:
MEP:
6.5%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.89
Avg Expression:
0.91
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 6.81440254108211 | 0.000159724119598927 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 6.11788021176878 | 6.03698274544331e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.09185560488793 | 0.0111292562356286 |
| 4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.05998762496832 | 0.0139664376240639 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 4.26014695428295 | 0.0225211950140524 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 4.91481093377887 | 0.0166768351087558 |