Chr:
Chr6
Start:
28920099
End:
28921014
Strand:
-
Ref_name:
OSA-LNCN6130
Sequence
(OSA-LNCN6130.1):
UAGAGUAUUAAACAUAUACUAAUUACAAAACUCAUUCCAUAAUCUUGGACUAAUUCGCGAGACGAAUCUUUUGAGUCUAAUUACGCCAUGAUUUUGACAAUGUGAUGCUACAGUAAACUUUUGAUAAUUAUGGAUUAAUUAGGCUUUAAAAAAUCGUCUCGCGGAUUAGCUCUCAUUUAUGAAAUUAGUUUUUUUAUUAGUCUAUGUUUAAUACUCUAAAUUAGCGUCCAAACAUCCGAUGUGACAUGAGCUAAAAAGUUUUAAUCCCAUCUAAACACCCCCUCAAUGCGCGACGGCCUCGAUGCAACGUGCUAUGAUGUGAUCCAAAUAGCCAACACUUGGCCACAAGUCAUGAUGCUAUGAUGGAUGACUAAAAUUUUUUCGAGGGAAUGGGCAGGAGCUCUGCCAUUUCAAUUAUAGAAGGAGAAAAACAGAAUGGUUUGGUUCAGCGAUGGAUGACUAAAAUGGAGUGGGGAUUUUCUCUGUUCCAACGCAUUUUCUAAGCAUCAGCGGUACACUGUUACAUUUAUAAAAUAAAGUACACUGUUACUGCGACAAAUGCAACAAUAAGAUUAUGUUCUUGAUGAUGAGAACAUUUAUUGCAAUGUGGUUUUCAAUUCAUAAUUAACAACUGCAGGAAACUCAUAAAAGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
60.37%
ME_num:
MEP:
39.23%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.82
Avg Expression:
1.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.42623814744153 | 0.00396617442199616 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.69001305796903 | 0.0204091737850853 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.04586292660331 | 0.000387601649458672 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.75689569954763 | 0.0466008534193255 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.87865764933927 | 0.00887206361335554 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.07735268050538 | 0.0433769218442077 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.41524233174419 | 0.000825453589150003 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.35637565110081 | 0.000830499977955777 |