Chr:
Chr6
Start:
28356385
End:
28357612
Strand:
-
Ref_name:
OSA-LNCN6126
Sequence
(OSA-LNCN6126.1):
UGCACAUGCGCACGCCGGCGAUCGAGCGCCGCGAAUCCAUCCAUUUCGCUAAACAGAGGAGCAAAUGAAAGCUCGUUUUCUCAGAACACAAGUAACAUGUCCUUUUCAUGACAUUUGCUUGUAGAAAAUGCCAUUUGGACUGCGCCGGCUUUGUUAGUGCCAGAUCAGUGCCUUAAUUUCUGUGGUGAACUUAAUUAGUAGCCGCAAUCUUGGUUUGCAGCUCGGGAUCCAGCUCAAGAACAAAAGAAAUUAAACAUGGUACUUAAUUACUACUGAUCGAUUGACAGUGACACUCCUUUUAGUUGUGACAAAAGUUUGGUUGGUAGCUGAUUGGUCUGCCAAUGAUUGACAACAAGAACAAUUGUCCAUUUGACUCCUAGUGUGAGUCCCACUAACCUUUUUACCAUAAAAUUUCUAUAAACCUCAACUCAUUCAAAUUUUUAAGAAAACAUGUUUCAUUUUGUCCUUGAACAGUGCAUUCUAAUACAUGGCCACAAAAUUUGAGUUUUUUUAGGAAAAAAACAGUCAAAAUUGUCAGAUCAAGUUUGAUACUAAUAUAUGCAGCUACAAUUAGGUAGUGGAUUAAGUAGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.78%
ME_num:
MEP:
21.14%
HE_num:
HEP:
29.88%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.79
Avg Expression:
36.74
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.79374570388937 | 2.51890480251868e-69 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 5.1390900593229 | 1.7558569379192e-52 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | -1.29929265585932 | 0.00494326813237265 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.93406594561566 | 1.77252411406638e-75 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.43688426990933 | 1.4903421071817e-24 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.41041784755021 | 9.12015654029856e-58 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.15647838548084 | 2.18027663247612e-11 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 3.2749852120997 | 5.81962047802072e-15 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.58434767038604 | 4.02212585771924e-37 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.03146045789977 | 0.00313280884370395 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.02855222284585 | 1.30817986155814e-27 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.66903519473148 | 2.92391291552625e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.86252457691116 | 2.68988233507519e-24 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.80562935147748 | 1.32961100813156e-71 |
| 15 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 1.25316233666839 | 0.000368613175202353 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.79721366470722 | 5.42368440235316e-43 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.62749973610537 | 4.92901351237923e-39 |