Chr:
Chr6
Start:
28172583
End:
28174121
Strand:
-
Ref_name:
OSA-LNCN6122
Sequence
(OSA-LNCN6122.1):
GUGAAGCUUCCCAUACUGCAACUGUGCAGCUAUAUUCAGGAAUUUUUCAGAAACCAUACAACCAAGAAGAGUGAAAACCUGCAGCUAUUAUUUUGCUCUGUCUAUCUGAAACUGUAAAACAUGUACUAGUACUUUACUCAGAAAAUGGUUUCAUUAUGAGUGAGAAGAGAGUACUUUACUGUUCCUGUUUCAGUAAACACCUAGAUCAAUGAAUGUAGCUGAUUACACUGACAUAAAGGUGGCAUCUCAUGCUGAAUUCAGUGAUGAUGGAUGCAAGUGCCAUUAAGGUCAUCUAGGCAUAAUUAACAAAAUUGCAAUAGGAUAGCUGUUUUCAGGCCAUUGCUCAUCUGGUUCAUUCUUUACAUAGCACCCUCAUCAUACCUAAUCUCAUAGUCUUUUUUUUCAUUUUGGUUCAUUCUCAGUGCAAAAGGCAAAGUAUUCUGUGUUAUAACAUGGGGAAAGAAUAGGCUAUAUCUUGGGAUCAUUGGAUGCUUUUCUUGACUACUUUGGACAUUGUUCAUCACUUUUUUUGCUCAGUUUUUUUUCCUCCUCCCUUGAUGAAAAUUGUCAUGUCAUGCUUUUGCCACCACAUGCAAAUGCAAUUCUAUCACUGCUCUCACAUCUAAAGAUUUGAUUGCAUCAAGGACAUUGUUAGUGGGGCCCACAGUCCUUUGCUCCAUGGGGCCCACCCUUGAAUUAAGAGGACAGUUGUGGGUGAGGGGUUUCCUUCAAGAACACUGUUUUUGUUGCCGUGGCAUAACUUGCAUACUCCUAUGUGUUUGUAGUAGUAGCAUGCAUCAACCCCGUCUCUGAAACAGCGUUAAUAAUAUCUCUUCAACCUUCAUCUGCAGACAAUAUUCCAGUACAUAGCUGACAAACCAGAUAUGCAGUCGGCAGAGUGAGAGGAAGAGAAUGUCCACGUGGCAUCUCCUGGACCAUUCCGUCCAGCUCGGCUAGCACUUAUGGUGAUCAAAGAUCUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
87.6%
ME_num:
MEP:
11.79%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.91
Avg Expression:
1.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.14401118597905 | 0.0208143954042846 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.4259231464274 | 0.00836009967291346 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.34192439998855 | 0.0205878150250385 |