RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN6120

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

28037182

End:

28041949

Strand:

+

Ref_name:

OSA-LNCN6120

Sequence
(OSA-LNCN6120.1):

AAAAAAAAUAAUUCCAAUAACUAAAAACAAAUUAAGGGCAUGGGCACACCCCAAAAAAAGGGGGCAAAAAAGGGGGAGGAACUAAAGAAAAAGAGAAGGCAUGAUUCUUGAGGCAUCACCUUCAAUUUGGAUGCAAUUGAUUGGAUCAAGAAGGUAGCUACUACUAUACUAGUAUAUAUCUGUGCCCAUUGAAGGAAAAACAUUGGAGGCAUGUAGGAAAGGAACAAAGAGAAUUUUCUUGGAAUAGAUAGAAGUUAUGGUUGGUUCCAAGAUCUUGUUCUUUUUGUACAUCAAGAAAAAGAGAGAAAAGAUGAGUUGUUACCAAGAUCUUGAAUUCAAGUACUGAUUUCUGCAGAACCAACUGCAAGUUAGCUAGCUAGAUAAACACAUGAUUGGCAACCUUAGAUGCGUGUGUGCACAAACAGCUAAUAAUUGUGGAAUGAUCAGUUGAUCUUAUUCUAAAACUGACAGAAUUCUGCAGGCUGCUGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

359

LEP:

72.97%

ME_num:

76

MEP:

15.45%

HE_num:

56

HEP:

11.38%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.87

Avg Expression:

11.12

Tip: OSA-LNCN6120 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA4.481491359095860.0231659710340666