Chr:
Chr6
Start:
27998474
End:
27999928
Strand:
-
Ref_name:
OSA-LNCN6117
Sequence
(OSA-LNCN6117.1):
GUCUCAUGUUGUUCUGGCUUACUGGUGUAGUGAACACUUGUUUAAUAAAUACUUCGUAUUUUAAUUCACAAACAGAGUAUCGUGAGCAAAGCAGAGCCAUAUCAUCUCGAGAGUCAAAACAAGCCAAACAACAACUUGAGCAUUGAAACGGGUCAAAACAAAGAAUUUAACAAUAGGGAGAAAUUGGCCCCAGUUAGAGAAUAAACAGAUAUAAGUAGAAUCUACAGAGAAAUUGAGCAGUACUCCCUUCGUUUCGAAAUGUUUGACACCGUUGACUUUUUAGCACAUAUUUGACUGUUCGUCUUAUUUAAAAACUUUUAUGAAAUAUGUAAAAUUAUAUACCUACAUAAAAAUAUAUUUAACAAUGAAUUAAAUGAUAUGAAAAGAAUUAAUAAUUACAAAUAAGACGAACGAUCAAACAUGUGCUAAAAAAAUUAACGGCGUCAAACAUUUCGAAACGGAGAGAGUAUAACAUAAUUGUCAUUGAGCCAUUGACUGGUCUCGAUAGAUCCAACGUGGAGUACACGAGUUGACCGUUGAGCAAAUUAAAUCUUCUAUAAAAAAGCUUUGUAUAUUGCAAACAAGCUCGACGCUGUUAACUGGGACGCUUUCAUAGUUGGAUAAUUUUAGAACAGAUGCCAUCACCGGGACCAAAGACAAGUCGCAAUCUAGCAAACCUGGGCAAACAGCAGUGAUCAAGUGAAGCCUAGGUGGCACCGAAGAGGUAGCCGCGGAGAGCCACCGCGACGGCGACGCCGAUCCUCUCGCCGCCGCCGGGAACUGCUCGGCGACGGAGGCCAGCAGCGCGAGAGAUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
74.59%
ME_num:
MEP:
24.59%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.90
Avg Expression:
1.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.72167135255303 | 0.0107099472264554 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.99656622256185 | 0.0479091968804171 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.93999574162416 | 0.000133272391174071 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.65753702805291 | 0.0115409902815236 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.21144210528297 | 0.000673319373826998 |
| 6 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -2.18115523583389 | 0.0337127097069089 |
| 7 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -7.24829144400015 | 1.07553738404425e-06 |