Chr:
Chr6
Start:
27813144
End:
27815758
Strand:
-
Ref_name:
OSA-LNCN6115
Sequence
(OSA-LNCN6115.1):
AAAACAAAGAAAAACCACGCAGGCGUUGCUGCAGUGCAGAGGGAAGGGGAUGGAAGUAAAAGAUGGAAGUUGGGAACGGCCAAGGUGAAGAUGAGGAAGAGAUGGGAUGGACGCCGUUUGCCAUCACCGUCAACGACCGUCGCCUGCGCCACCUGCAUCCACGCGUGGAACAACCGGAUCAAGCACAGCGGCAGCAGCAGGACGGCCACCACCGCCGGAGCACCCAACCCGCUGGCCCACCGUCGUCGCCGCGGCUGGAUCGGGAGAUCCCCUGCGCCGGAUCCGCCGCCGCCGCUCUCCCUACCUCCAAGUUUCGCCGCCGCCGAGUCCCCCUUCUCUGGAUCCGCCGCCGCCGCCCUCCCUACCUCCAAGCUUCGCCGCCACUCGAGCCCGCCGCGUCGACAUCACCGCAGCUGCCGCAACCGCUCUCGUCGAGCAUCACGAUGAGCGGCGGGAUGGCGCCGAGCAUCUCGCUCGCGGCGGC
Sequence
(OSA-LNCN6115.2):
AAAACAAAGAAAAACCACGCAGGCGUUGCUGCAGUGCAGAGGGAAGGGGAUGGAAGUAAAAGAUGGAAGUUGGGAACGGCCAAGGAUGAGGAAGAGAUGGGAUGGACGCCGUUUGCCAUCACCGUCAACGACCGUCGCCUGCGCCACCUGCAUCCACGCGUGGAACAACCGGAUCAAGCACAGCGGCAGCAGCAGGACGGCCACCACCGCCGGAGCACCCAACCCGCUGGCCCACCGUCGUCGCCGCGGCUGGAUCGGGAGAUCCCCUGCGCCGGAUCCGCCGCCGCCGCUCUCCCUACCUCCAAGUUUCGCCGCCGCCGAGUCCCCCUUCUCUGGAUCCGCCGCCGCCGCCCUCCCUACCUCCAAGCUUCGCCGCCACUCGAGCCCGCCGCGUCGACAUCACCGCAGCUGCCGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
61.18%
ME_num:
MEP:
37.4%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.93
Avg Expression:
8.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.52097584204598 | 4.13996014347078e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.4548254308011 | 5.4650705793631e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.91296802524928 | 3.62115992989944e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.55096096482897 | 0.0446871513298782 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.64452235980689 | 3.31869020783021e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.52553359535512 | 9.71823347746262e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.87112616856875 | 0.00519297279981345 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.67258612488044 | 7.12736838544164e-07 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.15939896078685 | 3.3717716739006e-11 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.9316879200228 | 2.16590797586724e-08 |
| 11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.61004016580465 | 0.00337722172261668 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.51870864631271 | 0.00622013285880895 |
| 13 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.89566471702297 | 0.0241148713810295 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.84161479466569 | 3.21059881485184e-08 |
| 15 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.29153226739432 | 5.99603890193403e-05 |
| 16 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -8.4526423713562 | 4.87201063477288e-08 |
| 17 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -6.10748185887483 | 4.99094084695884e-06 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.10497828890579 | 0.000322873664940433 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.58861505686267 | 4.51089042808785e-07 |
| 20 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.88943603305175 | 0.0154965249885286 |
| 21 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.26271470814442 | 2.48720161281701e-05 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.98501220639344 | 4.23723857995425e-09 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.5117356794717 | 1.22984769211282e-16 |