Chr:
Chr6
Start:
27345984
End:
27366860
Strand:
+
Ref_name:
OSA-LNCN6112
Sequence
(OSA-LNCN6112.1):
CAGUUCGACUAGAUUUGGAUGGCUAAGUUGCCCAAGGAACCGUGACUGCAAAUUUCAUAGACAACAUACCAGUACAUCAUAAUAUCGUGUCCUCUACCAGCCAUCAAAGAGCAAAGUUUGUACCAUGCAAGUUUCGUCUUUGUCAAAGAAAAAAGAGAAACUAAGCUACAGAUAGAGGCCUGAAUGUAACGAUGUCCAAUAAGAUAAAACUUUUAGCACUUAGAGAAUGGCAUUCCUCACACUCGACACUCAGUCACAGAAGAAUCAAACAUCAACCACGCGAUGCCUAAAAAACCCGAAUUUGCAACACGAGUUACUACAUGAUAUAGCCCCAGAGACAAAAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
72.97%
ME_num:
MEP:
7.32%
HE_num:
HEP:
19.51%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.92
Avg Expression:
31.00
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.77014210153454 | 0.0329797286133901 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.40704152170345 | 0.00374134581727307 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.11844723935727 | 0.0104476415618476 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.87714250798058 | 0.0105465764207907 |