Chr:
Chr6
Start:
27263162
End:
27264608
Strand:
-
Ref_name:
OSA-LNCN6110
Sequence
(OSA-LNCN6110.1):
CCCAAAUGACAGCAAGAAGAAACAAGCAUUCUGAAACUUAAGUAGUGCUUGCAAAUUGGCACGAAAAUACUACUAAUGCAGCAAAGGUUACCAAAAAAUGUAUAGAAUAUUAUACAGUGUGAAUACUGAAAUUUGGUGUUAACCAAAUCGAGUAAAGAUUUUCUAAGAAGUUAACAAUACAGAUCAAAGUACAAAGAACCAUAGGCUCCCCUUGUAGCCUUACCAAUACUCUUGGCAAGACAAGAAAAAAACUUGCACACCUAAGACAAGCUCAUCCUCCCAGUUAAAAUGAUGAAUAAACACCUAUGAAGUCACUAUAACCUAAACUUCAACAAGCUUCCUCACCAUAGAAAAACUGAGUUGCCAAUCUACAUCAUCAGUUACUCUAAUUGUAAAUGACUCUUUUGGAAAGCAUGUCCACUGGCACAAACAAAACCUAAUUUUUCCAUCAACAAAUAAUCCAACAGGAGACCUAUCACUCGCGAAAAUAAAGAGAGAACCUAUCAUGCCACAUUGCCACAUCAAUUAACAAAUUUCUCCAAUUAGUAAACAACCGAACCAAGUAAACACCCCCAAAGCGUCACAUUAACCAAUCGACUGACAAAAAUUCCUGAAGCUCACCAAUCACCAUCAUUCACUUAUUCAAGUUGCACAACCGUUACUCUAUUUACUUUCUGGACCAAUGCCAUAAGAAGAGGCUGCCAAAUUUCUUUGAGGUAGGCUCAUGCCAAAACAUAGUAGGUAAUCAAAUUGCACCUAAUUGACCACCUAAAUAUGUCUUAGUACAAACAAUGAAGUUAGGACAAUCUCACACCUGUUACAAUCAAAGCAAUCAAGCCCAGGCGCCAUCAUAUAUGAGGAAUUCAAAAUACAAACAUCUGUGGUUUCAGGUUGUACUCAAUCCUGAGCAUCAAUAUCCUACUCCUCCAUUUUACCUAUCAAUAUUAUCAGCCAACCACACUCUCAAAAUUACAUAGGUCUACUAUACUAUACAUCAAUUCCUAACUUUGCAAACCGCUGAAUCGCAUGCUUGUACCAAGGCUGCAUAUUUUUUCCCACUUUGUCCAAAAUAAAACAUACAACAGAGUUCACAAGGCAUCCAAAAGCUAAAAAUUCAGAACUAUUUAUUGAAUCCAUAAUCAGGUAUACAGGAGAUCGAUUAAUUAAUACUCCAAAUUACACAGCAACGAUUCAAACUUAUAACCUAACAAACGAGCACGCUUCACCGGAAACGGAUUCCAAUUGCGCCAAAAAAAAAAAAACUC
Sequence
(OSA-LNCN6110.2):
CCCAAAUGACAGCAAGAAGAAACAAGCAUUCUGAAACUUAAGUAGUGCUUGCAAAUUGGCACGAAAAUACUACUAAUGCAGCAAAGGUUACCAAAAAAUGUAUAGAAUAUUAUACAGUGUGAAUACUGAAAUUUGGUGUUAACCAAAUCGAGUAAAGAUUUUCUAAGAAGUUAACAAUACAGAUCAAAGUACAAAGAACCAUAGGCUCCCCUUGUAGCCUUACCAAUACUCUUGGCAAGACAAGAAAAAAACUUGCACACCUAAGACAAGCUCAUCCUCCCAGUUAAAAUGAUGAAUAAACACCUAUGAAGUCACUAUAACCUAAACUUCAACAAGCUUCCUCACCAUAGAAAAACUGAGUUGCCAAUCUACAUCAUCAGUUACUCUAAUUGUAAAUGACUCUUUUGGAAAGCAUGUCCACUGGCACAAACAAAACCUAAUUUUUCCAUCAACAAAUAAUCCAACAGGAGACCUAUCACUCGCGAAAAUAAAGAGAGAACCUAUCAUGCCACAUUGCCACAUCAAUUAACAAAUUUCUCCAAUUAGUAAACAACCGAACCAAGUAAACACCCCCAAAGCGUCACAUUAACCAAUCGACUGACAAAAAUUCCUGAAGCUCACCAAUCACCAUCAUUCACUUAUUCAAGUUGCACAACCGUUACUCUAUUUACUUUCUGGACCAAUGCCAUAAGAAGAGGCUGCCAAAUUUCUUUGAGGUAGGCUCAUGCCAAAACAUAGUAGGUAAUCAAAUUGCACCUAAUUGACCACCUAAAUAUGUCUUAGUACAAACAAUGAAGUUAGGACAAUCUCACACCUGUUACAAUCAAAGCAAUCAAGCCCAGGCGCCAUCAUAUAUGAGGAAUUCAAAAUACAAACAUCUGUGGUUUCAGGUUGUACUCAAUCCUGAGCAUCAAUAUCCUACUCCUCCAUUUUACCUAUCAAUAUUAUCAGCCAACCACACUCUCAAAAUUACAUAGGUCUACUAUACUAUACAUCAAUUCCUAACUUUGCAAACCGCUGAAUCGCAUGCUUGUACCAAGGCUGCAUAUUUUUUCCCACUUUGUCCAAAAUAAAACAUACAACAGAGUUCACAAGGCAUCCAAAAGCUAAAAAUUCAGAACUAUUUAUUGAAUCCAUAAUCAGGUAUACGAAUCGCAUGCUUGUACCAAGGCUGCAAUUUUUUCCCCACUUCGUCCAAAAUAAAACAUACAACAGAAUUCAGAAGUCAUCCAAAAGCUAAAAUUUCAGAACUAUUUAUUGAAUCCAUAAUCAGGUAUACAGGAGAUCGAUUAAUUAAUACUCCAAAUUACACAGCAACGAUUCAAACUUAUAACCUAACAAACGAGCACGCUUCACCGGAAACGGAUUCCAAUUGCGCCAAAAAAAAAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.85%
ME_num:
MEP:
90.45%
HE_num:
HEP:
6.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.56
Avg Expression:
4.28
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.03839416026725 | 0.0164820261256715 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.28681595546387 | 4.09396022700036e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.11704428594526 | 0.00294318545437414 |
| 4 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.40653648174094 | 0.0319603109097934 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.16113963563532 | 0.00042590926842278 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.1329116710712 | 0.000133639092820972 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.48983853600645 | 0.0245359833561243 |
| 8 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.53780813996892 | 0.0300359369979508 |
| 9 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.53773920084491 | 0.0304384540396441 |
| 10 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.53761776879167 | 0.0301357610154945 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.71713608685526 | 0.000828589381455207 |
| 12 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.125874758563 | 0.00135726814640982 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.23394839709488 | 0.00605723966243928 |