Chr:
Chr6
Start:
27123964
End:
27124616
Strand:
+
Ref_name:
OSA-LNCN6103
Sequence
(OSA-LNCN6103.1):
UGACGAUCGAUCAUAUUUAUUGGGUGGUCCAAUGCAAUGUGAGGUUGGAAGCAAAAGAUAACAACGAUUCUUGGAGUUCAUGGACCAGUACUGAACACUGAUCGAUUUGUUUGUUUCCCGUGCGAUUUUUUUUUCUUUUUGGUUGCAAGACACCCACAGAGGCUAGCUCCCUCCCAUUCUACCAAUCUACUGUAUAUCUUCUAGUAAGCUGAAGCCUGAAGCUUCUGCAUUAGCAUCGGGUAGAUGGCUAGAUCUGUGGAUGCUAUAACUAAUCCCAUCUUUCUUUGCAAAAUCUCCAGUCUAACAUACAAGAACUGAAGAACAGAGGCGUGAAACUCGAUUGCAUUGCGCAGAAUCCUACUAUUAUCUCUGCUGCUUUAUCAGUUCUUGCAAUCAGCUCUGAACUCUCGAACCAGUGUAACCAAGAACUACAAUUAUACAACAACAGAAUACGCAUAGGAGAUGGCUACGUAUGAGCAGAGUUGGGGGGCGCGGGCGGUGGGCUUACCGCCGUUGCGGGCGCGCGCGCGGGCGGCGGCGACGGCGAGCCACGCGCGGCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
30.69%
ME_num:
MEP:
53.66%
HE_num:
HEP:
15.45%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.73
Avg Expression:
8.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.31686629519165 | 1.45560613069983e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.93880640618794 | 0.000179822484449548 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.88263311810475 | 2.52610227233441e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.8627698584059 | 6.63320957130469e-09 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.41641459297306 | 0.0264383874820206 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.70221267324511 | 6.63322347637227e-10 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -5.19548766832452 | 0.0403312516396564 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.769338178124 | 4.65596188136438e-10 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.6185249883442 | 8.7318601437651e-08 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.23778924312697 | 0.0337752626358792 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.4341500492881 | 1.37902955357483e-06 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.47200934303524 | 9.49248029487697e-09 |