Chr:
Chr6
Start:
26702302
End:
26703671
Strand:
+
Ref_name:
OSA-LNCN6092
Sequence
(OSA-LNCN6092.1):
CCACUCGUCUUAUUUAAAAAAUUUAAAUAAUUAUUAAUUCUUUUCCUAUCAUUUGAUUCAUUGUUAAAUAUACUUUUAUGCAUACGUACAGUUUUAUAUAUUUGACAAAAGUUUUUGAAUAAGACGAACGAUAAAAAUAGAAUAAAAAGUCAACGGUGUCAAAUAAAAUGAAACGAGUAUAUCAGGGAAUGAAAAUUGAAAGCAAAGGGGAUGCUCUCUGCUGCACCUUUGUGAGACCACAGGGGCAAGUGUAUUGAUUGUAUGUAUGUACAUCGUCGGACGUUUCCGAAAUCUGAAGAGGGCAAUUAACGACGAGCAGACGUGUAUGUGUAUAUAUGCAUUAGGCCACUGGUGAAGAAACCAUCUUUGGUCAGUCGACCAGAUUUUACAAUAGUCCUGGUUGUAUUAAAAACCGAGACUAAAAACAUCUUUAGUCCUGGUUUGAAAGCUCCAUGCUACUUUUCAAUCUUUAGUCCCGGUUGGUAUUACCAACCGGGAAAAAAGAUCGUCAUACGCUUUACUCCUGGUUGGUACCACCAACCGGAACUCCCAGUUGGUAAUACCAACCGGGAAAAAAGAUCGACGCGGAGAUCGGAGAGGCAUGCGUGAUCGGAUCGAGACCGAGGGCGGUCGGGCGCGGAGGCCCGGCCGGCGCGGCGCGCAGUGAGGCGGCGGCCGGCGCGAGGGCGGCGGGGCACGGCAGGACCUCCGGCCGGCGUGGCGGCGGCGCGUCGCGCGGUGAGGCGGCGGCCUGCGGCGGCGGGGCGCGGAGGGCCGGCCGGCGAGGCGGCGGAUUUUUUUUUUUUUUAAGAAUCUGAGAUUGUUGUGUGAUGUAUUUGAUUGGAUCUGAUUGUUGUGUGAUGUAUUUGAUUUGUGUGUGAUGUGAAUAUUUGAUAAUUUUGUAGAAGUUGUAAUGUAAUUUUUUUUGAGAUUUUGUGAUGUAUUUGAGUAUUUAAGAUGAUCGAUUGUGGAUUUGGAAGCAAUUUGAGAAUGAUUGAUUUGUGAUUUUGAGGACGGGAUUGAUUUGUGAUUUUGAUUAAAAACAAUGAAGAAAAGAAAAUAAUAAAGAGCAACCGGAUCUAGUCUCACCAACCGGGACUAAAAA
Sequence
(OSA-LNCN6092.2):
CCUUAUCUUCCUCUCCUUCUCCUCUCCUUCUCUCUAACAGACCGAGGGCGGUCGGGCGCGGAGGCCCGGCCGGCGCGGCGCGCAGUGAGGCGGCGGAUUUUUUUUUUUUUUAAGAAUCUGAGAUUGUUGUGUGAUGUAUUUGAUUGGAUCUGAUUGUUGUGUGAUGUAUUUGAUUUGUGUGUGAUGUGAAUAUUUGAUAAUUUUGUAGAAGUUGUAAUGUAAUUUUUUUUGAGAUUUUGUGAUGUAUUUGAGUAUUUAAGAUGAUCGAUUGUGGAUUUGGAAGCAAUUUGAGAAUGAUUGAUUUGUGAUUUUGAGGACGGGAUUGAUUUGUGAUUUUGAUUAAAAACAAUGAAGAAAAGAAAAUAAUAAAGAGCAACCGGAUCUAGUCUCACCAACCGGGACUAAAAA
Sequence
(OSA-LNCN6092.3):
CUCCUUCUCUCUAACAGACCGAGGGCGGUCGGGCGCGGAGGCCCGGCCGGCGCGGCGCGCAGUGAGGCGGCGGCCGGCGCGAGGGCGGCGGGGCACGGCAGGACCUCCGGCCGGCGUGGCGGCGGAUUUUUUUUUUUUUUAAGAAUCUGAGAUUGUUGUGUGAUGUAUUUGAUUGGAUCUGAUUGUUGUGUGAUGUAUUUGAUUUGUGUGUGAUGUGAAUAUUUGAUAAUUUUGUAGAAGUUGUAAUGUAAUUUUUUUUGAGAUUUUGUGAUGUAUUUGAGUAUUUAAGAUGAUCGAUUGUGGAUUUGGAAGCAAUUUGAGAAUGAUUGAUUUGUGAUUUUGAGGACGGGAUUGAUUUGUGAUUUUGAUUAAAAACAAUGAAGAAAAGAAAAUAAUAAAGAGCAACCGGAUCUAGUCUCACCAACCGGGACUAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
45.12%
ME_num:
MEP:
41.26%
HE_num:
HEP:
13.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.80
Avg Expression:
4.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -10.5490491858085 | 2.79622906754285e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.14974604417453 | 0.0452245463756598 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.58904908642108 | 0.00363183832572243 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.87685429657502 | 0.000317295477919152 |
| 5 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -7.24414202375557 | 7.62082590536828e-11 |
| 6 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.67672673501587 | 3.09249259850132e-06 |
| 7 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.67665292920929 | 3.15791765339998e-06 |
| 8 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.67660231908955 | 3.12163905984055e-06 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.7657296906251 | 7.75989405990945e-09 |