RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN6089

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

26509651

End:

26512365

Strand:

-

Ref_name:

OSA-LNCN6089

Sequence
(OSA-LNCN6089.1):

CAGCAGUAGCUGAAUGACGAGGAGAGCUCAAGCCAGCGGUAACAGCGAAACUUCACAAAAUCGAGAUUGAAAGUCCAAAAUAGCCAUUCAUCACUGACAGGAGCUCAGGCCUCAAGGUCCGAUGACCAAACCCUACCUGUCACCAUGGCACCGAUGCCACACCAGACAAUACCAACCUACGGUUCCCAGCCCCCAACGCCGCCGCACGGCCAUGGAUGAGAAUCCAGGCAACCGCACGGCGCACGCGUGGUGGAGGCGGCCCCGGAGUGUCAAAAUAGUGGCAAAUAGUUACAAUGGCAUGGAUCCAAUGGCAAAUAGUUAAAUUUCCCCAUGAUUUCUGCUUGCCCUUAUAGCUCAGUUUGUAGAGCGUCCAACUGAUACACGCACGCACACAAGCGUACACAGUGAGGAGAGUAUCAGAGGAGAGAUUGGAAGGAGGAGAAGGCGGCGGCGGCGGCGGCGACGACAGUGAAUGGCAUUACAUCGAAUGCCAGUUAAAGUGAUGCCAUUCCAGCAAAUCAACUCUUGCGAUGGUAGAUGUGCAAUUUUCUCACCAGAUUUGGCUGAUAGCCAUUAGUCUGCUGUACUAUUAAACCUGCUCUGAUCUAGGGUUCCAGCCCCCCACCACGGCCGCACAGCCAUGGAUGAGCAUCCAAGCAGCCACGCGCGAGCGUGUGUGGAGGCGGCCCAGACUGAAGCAAAUCAGAAAUCUGGUGAUGGUAAUGGUGAAGGCGAGCACACCAAACCAAAAACCAAAUCAAAAGCGCAACUGAAACAAACGUACGAAUCAUCCAUUCAUCGCCCGCGGUGGUGGCUCAGAUCUCCCCGUGGCUGCCCCGCCGCGGCACUCCGACCCCAACGACCCAACGGAUCCCAAACCCCCCACCCAUCGAGCUCGCCACGGUGCCUGCU

Sequence
(OSA-LNCN6089.2):

UCUCCACCAGGGGGGAGCAUCCCAAGCCGCAGCGUCGCUGCGCGGAGGCAGGGGUAGCACCGGUGGAUCGGGGGGCGGGGGCAGCGGCGCCGGCGCCGCAUCCGUCCUCAUCGCCACCUUCCCCACAACACAAGGUCCCAGGUUCGAUCCAUCGAUCCAUGCCAUGCCAUGCAUGAUGAUGCAUAGGCCACCGCAGGCGCGGCGAGCGGCGUCGCUCUCUGCUGAUCUGCUCGGCUCGGCUAGUCAGCUCUCCGCCGCCGUCCACCGGCAGCGGCGGCCUAGGGAUUGUAGAGGAGAAGAGUGAGGUUGGGGGAGAAGAGAAGAGGGAGUAGGAGACGAGACGGAGAGAAAUUUUAGCGUGAAACUAAACACAGCCUUACACCGGGGUCGCCGGCAGAGAGAAGUUUUUGUACGGGAAAACUCGGGAAGGGAAGGGAAGAUACCUGUACACGAUGGGAGCGGUGCACGUGGCGAGCGGAGAGGGCAUGUGGGAGAGGAAUCCCAGGCGGUGGCCCAUCUGGGCUGGUGGUUCAGCCUGUUGGGCCGCUUGUGGCCUCAAAACGAGCCCAUGAAUGCGUUGGAUCAAAACAAGCUAUGCAUUUUCCCGAGGAAAAAAGUACAGCGAAGGUCCCUCAACUUAUCAUCUGGGCCGGUGGUCCAGCCUGUUGGGCCGCUUGUGGGCUCAAAGCCAAAUCAUGACCGCGUUGGAUCAAAACUCAAAGCAUUAGCUUUGCAUUUUCCCGAGACUACGGGCCUGUUUACGGGCCUGUUUGGUACAGCUCCAACUCCUAGAUAUAACUCUAGGAGUUGAGUCUGAAGUAGAGUUAUGAGCUACCUAAACCAAGCUCCACAGCUCUAGUACAUUUUUUUGUGAGAGAGCUCCAACCAACUCCACUCCUAGUUUUAGUGGAGCUGAAAUUAUUUGGCUGAGCUCCAGCUCCAGAGGGGUGGAGUUAGAGCUGGAGCUGUGCCAAACAGGCCGUAAUGUGCCCAUGCGUUGCAACGGCCCGUAAUGUGCCCAUGCGUUGCAACAGAAUCUGGAGUAAUGCGGGAUCUGCACGCAGACACGCAGUAGGAGGGAGGAGGAACACUGCAACUUUAAAUUAGUAGAGAAAAAAAUACAUAAGAUUGAGUAACACUGCAAAUUCGCAUGUAUUGGUUGAAAACAAUGGAAUUUGAUUAAAUCUGGAGCAAAAGGUUUUAACAAAUUCGAAACUGUACGGUUUCAACAAAUUUUCAGCCGGAUUGCCCACAAGAAAAGUAAGCUUAAAAUUUUAAGGGCAAGAAAAAAUAUGAGUUUGCGCACAACUGCAAAAUAUUACUCCCUCCAUCCCUUAAUACAAGGGAUUUUGAUAUUUUGUUGUCCUGUUUAUGCACACGUCUUAUUUAAAAAAAUUGUGCAAAUAUAAAAAACAAAAAGUUGUGCUUUAGAUAAUAAAGUAAGUCACAAAUAAAAUUCCAAAACUUUUUGAAUUAGACGAAUUGUCAAACAGUGCAAGCAAAAAUAUCAAAAUACCUUAUAUUAAGUGACGGAGGGAGUAGUACACAUGUUAAUUGAAAACAAUGAAAUUUGAGCAGAUCUGAAACAAAAGAUUUCAGCAAAUUCGAAACUUGCUGUUUGAAAAUAUUUCCAACCGUAAUUAUUUGAGAAUCACACGAGCGGCAGGCACACUGUAGAAUUUACAAGAGAAACGAGUCGCUGAAUAAAAAAGUAGUGAAAGUGCAAUAUAAAUCAUCGAAGACAUUCAAGCUUCAAGCCCAGCAAAAUUAGAUCAGAACAUAAAAAUUCAGACGAUAAAUAGAUGAGUUUUCCCAUCGAAUUGUUGACAACGACAACAGAUGACACAAUUUUUCAGGCCAUCAAUCAGUGACAAAAAAAAAUAACAAAACAAAAAAGAGGGUUGUCUGAAAGAACAGAAAAUAAAUAUGCCUUCUGGAGCAUUUCCCAAAAGUACCAGCAGGCAAAUAGUACAACUUUCAGACAAGCAAGUGCAACAAACAAACAACGAGGAAAUCAAUAUACACUAGAAAUUUAAAUUAGAAAAUCUUUACGGAAUGGCUCAGAUUUCACCCCCAUUAUGAAUCACCAAAGUUGGAUCAUGCCACUGUAGCAGAACAAUGCAAUAGAAUCUGUCUCAAUCUCUCUCUAUAUAUAUAUAUAUAUAUCUAUGUGCAUGAACCAUCUAAUGGGAUUGGCAUGUUCAUGAUAGAAUUAGAUCAUAGAAGUAAUAAAAACCUCAGUCCGCCACCACCACCGCCACCGCCAGCAAAUAGCCGCAAACUGGUAACCUGCCGCAAAGCAAGCCCUCCUAGUUUGGCGACCAGCUGAUCAAUUUAGCAAGGAACCAACUCAGGAGGUGUUAAUAGAUCUCCCAACACCGACAAAGGGGCAGCCAAAUUCAUCACAGCCAUUCAACAGGUAACAUAGAAAGGAAAUGCAACAAAACAAAAGGUAAAGUGUUUUGCUGAGAAAUCAAUUUGAAGCACUGCAUUAGUGUCAACAAAAGGAACUGUUGCCAUUUGUUCACCCAGGUUAUCACAGCAUAUACCAAAAAUACAUGAACUAAGUUCAAACAAGGCAUUAUAUGGUCCCUUUAUCCAUGACCAAAUGCUGAUUUCCAUAGCACGCAAACAAAUCAAACAUGUGAUGUAGGGCAAUUGUAACACUAUUACACAAAGAUGUGAAGCCAACCUUCAGUAAAUGCUAAAAGGAAAUAAAGCAAGAAAUCCAAAACAAUUCAAUUUCACACAGGUCAACAGAUACAAUCAGAACUAGAAGGGAACAAAUGAUUCAGAGCUCCCAUUCAAAAAAUCACCAUGGCAGAGUGAGCUCAGUUUCACCUUUCCUCCAUCGUACAAAACCCGAUUUUCACAUCUCUUGCUGCACAAUCUACUCAUACUAAUGUAAGUGUAGCUGCACUGGUUAUCACUCGUCAGUCAUCAGAGUGACCAUCCUAGGCACAGAAUCACUAACAUUAGUGGAUGGUUGAACAUCAUUGCCCCUCAUCCACAUUCCCACAUUCCAUUCCAUGUUUCCAACAUUCUGGAGGUUUCAGAAUCCCACAAGGAACACAGGCAGCAGAACACACCAUAUGUAGAGAUGAGCAAGAGGAGAUUACAGUGGUGACAGCAGGAGUAGCAACUAGUAAAUCAAAACCAUCAGCACCAUACCAAUCCAUCCAUCAGAUUUUAAGAUCAGAUCAGAUCAGAUCUCGCAACUACCCGCUAAAUCCUGACACGGAAGCCACACCAGACUCCACCGUGGAUUCCCAGCCUUUGCUGCUAUGAAUCCAAGGCAAUGGAGCAGCAGAGGCGGCACCCUGGAGGUGAGAACUGACACAGAGACCGGUUGGAAGUAGGGCUGUCAAAACUCAGCUGGAGCUCAAAACAAAUACUCUUGGAGAAGAGUAUUUCAGCGCAGAAGCGCUAAUUUAGUUUAUGAUUUUGGGUUUGGAUGGCGUGAACCUUCUCUUCUAGAUCUAGAAGUUGUUUUUCUCCUCAGUACUAAUAACACAGUUUAUUCCCCAAAAAUAAUCAUGGACGAGGGAUGAAAAAGUGCAUGUGAACACGUACUGUAUGGGUGCUCACCUGCGAGCGAGCGAGGAUUCAGCGGAAGGAAGCAGCGGGAUACCAGAACAGCUGCUCAUGGGGUGGAGAUCACCGCUAGCCAUGUACCUGUAGUCCUUUACGGCGGGAGCAUGCACGUGGCAAUUGCACAGGGCUCGUGAGAGUCACCAUCCAAUGUCCCCCGUGUCCACAGAUGAGUGGCUCACUGAUCAUCUGGGCAAAUGAUUAAGAGUUCUCAUUCAAACAAUUCACCAUGGAAGUGAGUGAUAGGCAGCAUUAAGUACUCAAUACUCAUUAACUUCAGCUUUAAAUCAGCAUGUAGCUAAUUUUCCAACACAGCAAACUGACCACUUGUAAGUUGGCAAUUAGCUUCAAAAAAUAACAGAGAAGUGCUAUGUUAAAUUUACCAGCACAGUAGCAAUAUGAAUAGUGUAAUGGCAUUGAACGGGCUCAGUUUCGCCUUUCCUCCUCAAACCUCGUGCUCCACAAUCUACUCAUACUAAUAUAAGUGGAGCUGCACUGCUUGUCACUCAUCAGUCAUCGGAGUGACCAUCCUAGGCACAGAACCACUAAGAGCAGGUACAAUAGCAGACUAUAAGCCAACUAUAAACGCAUAUCGAGAAGAUAAAUGAGGAGAGAUAAGAGCAGCGGGCAACAGAUUUGUAGCCAGCUGCAGCACAGACUAGGUGUAAUAUAUGUAUGACAGGUGGGACCAUGUAUUACUUGUGUAGGAGUAUAAGUUUAUAGGUAACUGUUGUAUAAAUUGGCUAUUAAAUUGACUAUAUACUAUUUGGAGCUAGUAGUUGGCUAUACUAUUAAACUUGCUCUAACACUAGUGAAUGGUUGAACUGACUCCAAGAGAGGUGAGAGUUGGUUCUUUAAAACCACAACUGCCUCAGAAAAGGUUUAACAUCAUCACCAUCAUCAUUGCAUUCCGUUGGAACAAGACCAAGUCCAUUGUAACAGGGAAGUGAAGAAGAAAAUGCUGGCAUAGACACACUAUUCACAUAGAAAAGGUACUCCAUCCGUCCCAAAAAAUAAGGUACUUUGACCGGAUGUGACACAUCCUAGUAACAAGGGUUCCUUUGGAACACAGGAUUUUCCCAUGAAUUAGUUCAAUACCCGUGAAAAUCCUACAAAAAUCCGCCAUUAUAUAGGAGGCCUAAUUGGGCUCAGAUUCGCCUUUACUCAACCGUAAAGAUCCAACAGCCACAUAUCUUGCUCCACCAUCUAUCCAUCAUAAUGUAAGUGGAUUUGCCCUGGUUAUCAUUAACAGAAUGACCAUCCUAGGUGCAAGAACCACCUAACAUUAGUGAGUGGAUAGGUUGCCAGAGAUGAUAGGAUCAGGUCCAAUUGACACCCACAGCUGCCUUGAUUCUUCAAUGGCAGGAUUGUCAGAAAAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

205

LEP:

41.67%

ME_num:

236

MEP:

47.97%

HE_num:

50

HEP:

10.16%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pistil

Tau :

0.92

Avg Expression:

26.24

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated2.74504233301372.0901560870074e-05
2Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated6.531712486887192.18913173977622e-06
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA5.132072565697330.000549479635937677